View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3052_low_35 (Length: 204)

Name: NF3052_low_35
Description: NF3052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3052_low_35
NF3052_low_35
[»] chr7 (1 HSPs)
chr7 (13-198)||(450042-450219)
[»] chr3 (13 HSPs)
chr3 (74-198)||(9329844-9329968)
chr3 (75-198)||(9336548-9336671)
chr3 (13-151)||(9395314-9395452)
chr3 (90-204)||(41985630-41985744)
chr3 (89-152)||(9695615-9695678)
chr3 (90-165)||(41980895-41980970)
chr3 (90-204)||(9343847-9343961)
chr3 (88-136)||(9756450-9756498)
chr3 (90-129)||(9485969-9486008)
chr3 (90-129)||(13864281-13864320)
chr3 (90-136)||(9686753-9686799)
chr3 (82-147)||(16011695-16011760)
chr3 (89-137)||(9613916-9613964)
[»] chr6 (7 HSPs)
chr6 (82-165)||(7025797-7025880)
chr6 (89-165)||(7012861-7012937)
chr6 (81-204)||(7041498-7041621)
chr6 (82-165)||(7029854-7029937)
chr6 (90-165)||(7046880-7046955)
chr6 (81-165)||(9170858-9170942)
chr6 (81-165)||(9159486-9159570)
[»] chr5 (2 HSPs)
chr5 (87-154)||(18571163-18571230)
chr5 (81-204)||(33541654-33541777)
[»] chr8 (1 HSPs)
chr8 (90-147)||(13170684-13170741)


Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 450042 - 450219
Alignment:
Q  13 attcttggtggcgagtagtgagttccagttgttgctagtgatttgctatacaaacggtgaccgtgttactgtatggattgatgtgtttaggcttgatgag 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||    
T  450042 attcttggtggcgagtagtgagttccagttgttgctagtgatttgctatacaaacggtgac--------tgtatggattgatgtgtttaggcttgatgag 450133  T
Q  113 aaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttcttaggcgatctgtattccttttctgcttctgcttc 198  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  450134 aaggagaaaaagtgggtcaagttgaggaatttaggagatacaattttgttcttaggcgatctgtattccttttctgcttctgcttc 450219  T

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Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 74 - 198
Target Start/End: Complemental strand, 9329968 - 9329844
Alignment:
Q  74 cgtgttactgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttcttaggcgatc 173  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||   |||||||||| ||  ||     
T  9329968 cgtgttcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagttggcgaatttaggagataaggttttgttcttggggaatg 9329869  T
Q  174 tgtattccttttctgcttctgcttc 198  Q
      ||||| |||||||||||||||||    
T  9329868 gatattcgttttctgcttctgcttc 9329844  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 75 - 198
Target Start/End: Complemental strand, 9336671 - 9336548
Alignment:
Q  75 gtgttactgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttcttaggcgatct 174  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||   |||||||||| ||  ||      
T  9336671 gtgttcctgtatggattgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatgg 9336572  T
Q  175 gtattccttttctgcttctgcttc 198  Q
     | ||| |||||||||||||||||    
T  9336571 atgttcgttttctgcttctgcttc 9336548  T

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Target: chr3; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 9395452 - 9395314
Alignment:
Q  13 attcttggtggcgagtagtgagttccagttgttgctagtgatttgctatacaaacggtgaccgtgttactgtatggattgatgtgtttaggcttgatgag 112  Q
    ||||||||| | || |||||| || |||||||||||||||  |   |||| ||| | ||| ||||||| |||| ||||||||||||||||||||||||||    
T  9395452 attcttggtcgagactagtgactttcagttgttgctagtggatatatataaaaatgatgatcgtgttattgtaaggattgatgtgtttaggcttgatgag 9395353  T
Q  113 aaggagaaaaagtgggtcaagttgacgaatttaggagat 151  Q
    ||| ||||||||||||| |||||||| ||||||||||||    
T  9395352 aagcagaaaaagtgggtgaagttgactaatttaggagat 9395314  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 90 - 204
Target Start/End: Complemental strand, 41985744 - 41985630
Alignment:
Q  90 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttcttaggcgatctgtattccttttctgc 189  Q
    |||||||||| || ||||||||||||||||| || |||||||||||| ||| |||||| |||| | |||||||||| ||  ||   | ||| ||||||||    
T  41985744 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 41985645  T
Q  190 ttctgcttcggattt 204  Q
    |||||||||||||||    
T  41985644 ttctgcttcggattt 41985630  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 9695615 - 9695678
Alignment:
Q  89 attgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagata 152  Q
    |||||||| || |||||||||||||||||||| ||||||||||||||||| |||||||| ||||    
T  9695615 attgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggata 9695678  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 90 - 165
Target Start/End: Complemental strand, 41980970 - 41980895
Alignment:
Q  90 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 165  Q
    |||||||||||||||||| | |||| ||||| || |||||||||||||||| |||||| |||| | ||||||||||    
T  41980970 ttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagtttaggggatagagttttgttctt 41980895  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 204
Target Start/End: Complemental strand, 9343961 - 9343847
Alignment:
Q  90 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttcttaggcgatctgtattccttttctgc 189  Q
    |||||||||||| ||||||||||| |||||| |||||||| ||||| || | |||||| ||||   |||||||||| ||  ||   | ||| ||||||||    
T  9343961 ttgatgtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgc 9343862  T
Q  190 ttctgcttcggattt 204  Q
    |||||||||||||||    
T  9343861 ttctgcttcggattt 9343847  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 9756498 - 9756450
Alignment:
Q  88 gattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttg 136  Q
    ||||||||||| ||||||||||||||| ||||||| |||||||||||||    
T  9756498 gattgatgtgtataggcttgatgagaaagagaaaaggtgggtcaagttg 9756450  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 9485969 - 9486008
Alignment:
Q  90 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggt 129  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  9485969 ttgatgtgtttaggcttgatgagaaggagaagaagtgggt 9486008  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 129
Target Start/End: Complemental strand, 13864320 - 13864281
Alignment:
Q  90 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggt 129  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  13864320 ttgatgtgtttaggcttgatgagagggagaaaaagtgggt 13864281  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 9686799 - 9686753
Alignment:
Q  90 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttg 136  Q
    ||||||| || |||||||||||||| ||||| |||||||||||||||    
T  9686799 ttgatgtattcaggcttgatgagaacgagaagaagtgggtcaagttg 9686753  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 16011695 - 16011760
Alignment:
Q  82 tgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttagg 147  Q
    |||| |||||||||||||| |||| |||||||||||||| || ||||| || ||| | ||||||||    
T  16011695 tgtaaggattgatgtgtttgggctcgatgagaaggagaagaattgggttaaattgcctaatttagg 16011760  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 9613916 - 9613964
Alignment:
Q  89 attgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttga 137  Q
    |||||| | |||| |||||||||||||||||| |||||||| |||||||    
T  9613916 attgatttttttaagcttgatgagaaggagaagaagtgggtgaagttga 9613964  T

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Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 82 - 165
Target Start/End: Complemental strand, 7025880 - 7025797
Alignment:
Q  82 tgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 165  Q
    |||| |||||||| |||||| |||| ||||||||||||| |||||||| |||||||||| |||||||||||   ||||||||||    
T  7025880 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttctt 7025797  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 165
Target Start/End: Complemental strand, 7012937 - 7012861
Alignment:
Q  89 attgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 165  Q
    |||||| |||||| |||| ||||||||||||| |||||||| |||||||| | |||||||||||  |||||||||||    
T  7012937 attgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttctt 7012861  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 81 - 204
Target Start/End: Complemental strand, 7041621 - 7041498
Alignment:
Q  81 ctgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttcttaggcgatctgtattc 180  Q
    |||||||||||||| ||||||  ||| ||||||||||||| |||||||| |||||||| | |||||| ||||   |||||||||| || ||  | | |||    
T  7041621 ctgtatggattgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttc 7041522  T
Q  181 cttttctgcttctgcttcggattt 204  Q
     || |||| |||||||||||||||    
T  7041521 gttctctgtttctgcttcggattt 7041498  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 165
Target Start/End: Complemental strand, 7029937 - 7029854
Alignment:
Q  82 tgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 165  Q
    |||| |||||||| |||||| |||| ||||||||||||| |||||||| |||||||||| ||| || ||||   ||||||||||    
T  7029937 tgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttctt 7029854  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 165
Target Start/End: Complemental strand, 7046955 - 7046880
Alignment:
Q  90 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 165  Q
    ||||| |||||| |||| ||||||||||||| |||||||| ||||| |||| |||||| |||| | ||||||||||    
T  7046955 ttgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttctt 7046880  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 165
Target Start/End: Complemental strand, 9170942 - 9170858
Alignment:
Q  81 ctgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 165  Q
    ||||| |||||||| |||||| |||| ||||||||||||| |||||||| || || |||| |||||| ||||   ||||||||||    
T  9170942 ctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttctt 9170858  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 9159486 - 9159570
Alignment:
Q  81 ctgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttctt 165  Q
    ||||| |||||||| |||||| |||| | ||||||||||| |||||||| || || |||| |||||| ||||   ||||||||||    
T  9159486 ctgtaaggattgatttgtttaagcttaacgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttctt 9159570  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 154
Target Start/End: Complemental strand, 18571230 - 18571163
Alignment:
Q  87 ggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagataca 154  Q
    |||||||| | |||| |||||||||||||||||| |||||||| || ||||||| |||||| ||||||    
T  18571230 ggattgatttctttaagcttgatgagaaggagaagaagtgggtgaaattgacgagtttaggggataca 18571163  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 204
Target Start/End: Complemental strand, 33541777 - 33541654
Alignment:
Q  81 ctgtatggattgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttaggagatacaattttgttcttaggcgatctgtattc 180  Q
    ||||| ||||| || |||||| |||| ||||||||||||   ||||||| ||||| | || |||||||||||   ||||||||||||| | |   | |||    
T  33541777 ctgtaaggattcatttgtttaagcttaatgagaaggagacggagtgggtgaagttaaagagtttaggagatattgttttgttcttaggggctgactgttc 33541678  T
Q  181 cttttctgcttctgcttcggattt 204  Q
    ||||||||| |||||||| |||||    
T  33541677 cttttctgcatctgcttctgattt 33541654  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 13170684 - 13170741
Alignment:
Q  90 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgacgaatttagg 147  Q
    |||||||||| || |||||||| |||||||| || |||||||||||| ||| ||||||    
T  13170684 ttgatgtgttcagacttgatgaaaaggagaagaaatgggtcaagttggcgagtttagg 13170741  T

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