View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3052_low_36 (Length: 203)

Name: NF3052_low_36
Description: NF3052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3052_low_36
NF3052_low_36
[»] chr3 (13 HSPs)
chr3 (1-188)||(41980710-41980897)
chr3 (1-176)||(41985496-41985671)
chr3 (7-186)||(9617542-9617723)
chr3 (1-73)||(9494881-9494953)
chr3 (120-176)||(9695835-9695891)
chr3 (1-73)||(9614026-9614098)
chr3 (123-168)||(16011847-16011892)
chr3 (1-49)||(9343840-9343888)
chr3 (123-174)||(9329703-9329754)
chr3 (1-36)||(9336548-9336583)
chr3 (123-186)||(9756253-9756316)
chr3 (152-186)||(9432742-9432776)
chr3 (123-171)||(9395147-9395195)
[»] chr1 (3 HSPs)
chr1 (1-186)||(18991062-18991247)
chr1 (2-91)||(4439813-4439902)
chr1 (2-92)||(4428583-4428673)
[»] chr8 (2 HSPs)
chr8 (51-186)||(13170761-13170896)
chr8 (104-186)||(44688961-44689043)
[»] chr2 (1 HSPs)
chr2 (2-73)||(20694375-20694446)
[»] chr6 (3 HSPs)
chr6 (16-74)||(9159589-9159647)
chr6 (16-74)||(9170781-9170839)
chr6 (29-73)||(213164-213208)
[»] chr7 (1 HSPs)
chr7 (123-168)||(450318-450363)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 5e-95; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 41980897 - 41980710
Alignment:
Q  1 cttggggaatggatgttcgttttttgcttctgcttcagatttgtctgttttcaaaggaaattgtattatctttgttggtgatgcattcctcccttttaac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41980897 cttggggaatggatgttcgttttttgcttctgcttcaaatttgtctgttgtcaaaggaaattgtattatctttgttggtgatgcattcctcccttttaac 41980798  T
Q  101 aaaatgctatgtgggatgtgtatttttcacttggatcaaggtcgtgtttcccctttgtctgattatcctgaatactacaacttgttag 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41980797 aaaatgctatgtgggatgtgtatttttcacttggatcaaggtcgtgtttcccctttgtccgattatcctgaatactacaacttgttag 41980710  T

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Target: chr3; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 41985671 - 41985496
Alignment:
Q  1 cttggggaatggatgttcgttttttgcttctgcttcagatttgtctgttttcaaaggaaattgtattatctttgttggtgatgcattcctcccttttaac 100  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||| | ||||||  || ||||||||||  |  |||| ||    
T  41985671 cttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatgcattctacgattttgac 41985572  T
Q  101 aaaatgctatgtgggatgtgtatttttcacttggatcaaggtcgtgtttcccctttgtctgattatcctgaatact 176  Q
     | ||||| |||||||||||| ||||||||||||||||| || | |||||||||||||||||||||||||| ||||    
T  41985571 cagatgctttgtgggatgtgtgtttttcacttggatcaatgttgggtttcccctttgtctgattatcctgagtact 41985496  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 186
Target Start/End: Original strand, 9617542 - 9617723
Alignment:
Q  7 gaatggatgttcgttttttgcttctgcttcagatttgtctgttttcaaaggaaattgtattatctttgttggtgatgcattcc--tcccttttaacaaaa 104  Q
    |||||||||||| |||| |||||||||||||||||||| ||||| |||||| |||||| | |||||| |||  ||||| ||||  || ||| ||  ||      
T  9617542 gaatggatgttcattttctgcttctgcttcagatttgtgtgtttccaaagggaattgtgtcatctttattgacgatgcgttcctatctcttctaggaacg 9617641  T
Q  105 tgctatgtgggatgtgtatttttcacttggatcaaggtcgtgtttcccctttgtctgattatcctgaatactacaacttgtt 186  Q
    ||| ||||||||   || | ||||| ||||||||||||||  ||||  || |||||  |||||||||||||| |||||||||    
T  9617642 tgcaatgtgggaatcgtgtctttcatttggatcaaggtcggctttcgtctatgtctcgttatcctgaatacttcaacttgtt 9617723  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 9494881 - 9494953
Alignment:
Q  1 cttggggaatggatgttcgttttttgcttctgcttcagatttgtctgttttcaaaggaaattgtattatcttt 73  Q
    ||||||||||||||||||||||| |||||||||||| |||||||  |||| |||||| |||||| | ||||||    
T  9494881 cttggggaatggatgttcgttttctgcttctgcttctgatttgtgcgtttccaaagggaattgtgtcatcttt 9494953  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 9695835 - 9695891
Alignment:
Q  120 gtatttttcacttggatcaaggtcgtgtttcccctttgtctgattatcctgaatact 176  Q
    ||||||||||||||||||||||||| ||||| |||||||||| ||||||||| ||||    
T  9695835 gtatttttcacttggatcaaggtcgggtttcacctttgtctggttatcctgattact 9695891  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 9614026 - 9614098
Alignment:
Q  1 cttggggaatggatgttcgttttttgcttctgcttcagatttgtctgttttcaaaggaaattgtattatcttt 73  Q
    |||||||| ||||||||| |||| |||||||||||||||| ||| | ||  ||||||||||||| ||||||||    
T  9614026 cttggggagtggatgttcattttctgcttctgcttcagatctgtgtcttaccaaaggaaattgtgttatcttt 9614098  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 16011847 - 16011892
Alignment:
Q  123 tttttcacttggatcaaggtcgtgtttcccctttgtctgattatcc 168  Q
    ||||||||||||||||||||||  |||| |||||||||||||||||    
T  16011847 tttttcacttggatcaaggtcggatttcacctttgtctgattatcc 16011892  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 9343888 - 9343840
Alignment:
Q  1 cttggggaatggatgttcgttttttgcttctgcttcagatttgtctgtt 49  Q
    ||||||||||| ||||||||||| |||||||||||| ||||||| ||||    
T  9343888 cttggggaatgaatgttcgttttctgcttctgcttcggatttgtgtgtt 9343840  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 9329754 - 9329703
Alignment:
Q  123 tttttcacttggatcaaggtcgtgtttcccctttgtctgattatcctgaata 174  Q
    |||||||||||||||||||||  | ||| |||||||| ||||||||||||||    
T  9329754 tttttcacttggatcaaggtcaggcttcacctttgtcggattatcctgaata 9329703  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 9336583 - 9336548
Alignment:
Q  1 cttggggaatggatgttcgttttttgcttctgcttc 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  9336583 cttggggaatggatgttcgttttctgcttctgcttc 9336548  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 9756316 - 9756253
Alignment:
Q  123 tttttcacttggatcaaggtcgtgtttcccctttgtctgattatcctgaatactacaacttgtt 186  Q
    |||||| |||||| |||||||| ||||| | |||||||||||||||||| |||| ||| |||||    
T  9756316 tttttcgcttggaccaaggtcgggtttcacttttgtctgattatcctgactacttcaagttgtt 9756253  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 186
Target Start/End: Complemental strand, 9432776 - 9432742
Alignment:
Q  152 cctttgtctgattatcctgaatactacaacttgtt 186  Q
    ||||||||||||||||||||||| |||||||||||    
T  9432776 cctttgtctgattatcctgaatattacaacttgtt 9432742  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 9395195 - 9395147
Alignment:
Q  123 tttttcacttggatcaaggtcgtgtttcccctttgtctgattatcctga 171  Q
    |||||||||||||||| |||||  |||||||| ||||||| ||||||||    
T  9395195 tttttcacttggatcagggtcggatttcccctctgtctgactatcctga 9395147  T

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Target: chr1 (Bit Score: 62; Significance: 5e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 18991247 - 18991062
Alignment:
Q  1 cttggggaatggatgttcgttttttgcttctgcttcagatttgtctgttttcaaaggaaattgtattatctttgttggtgatgcattcctcccttttaac 100  Q
    ||||||||||||||||||||||| |||||||||||| ||||| |||||| ||||||| |||||| |  ||||| |||  ||||| ||| |||||||| |     
T  18991247 cttggggaatggatgttcgttttctgcttctgcttctgatttatctgttgtcaaagggaattgtgtcgtctttattgacgatgcgttcatcccttttgat 18991148  T
Q  101 aaaatgctatgtgggatgtgtatttttcacttggatcaaggtcgtgtttcccctttgtctgattatcctgaatactacaacttgtt 186  Q
    || |||| ||||||||||||| ||||| |||||||  ||    |  |||| ||||||||| |||||||||| |||| |||||||||    
T  18991147 aacatgcgatgtgggatgtgtgtttttgacttggacgaacaaaggctttctcctttgtctcattatcctgactacttcaacttgtt 18991062  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 4439902 - 4439813
Alignment:
Q  2 ttggggaatggatgttcgttttttgcttctgcttcagatttgtctgttttcaaaggaaattgtattatctttgttggtgatgcattcctc 91  Q
    |||||||||||||||||||||| |||||||||||| ||||||| |||||  ||||| |||||| | |||||| ||| |||||| ||||||    
T  4439902 ttggggaatggatgttcgttttctgcttctgcttcggatttgtgtgtttctaaagggaattgtgtcatctttattgatgatgccttcctc 4439813  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 4428673 - 4428583
Alignment:
Q  2 ttggggaatggatgttcgttttttgcttctgcttcagatttgtctgttttcaaaggaaattgtattatctttgttggtgatgcattcctcc 92  Q
    |||||||||||||||| ||||| ||| |||||||| || |||||||||   ||||| |||||| | |||||| ||| |||||| |||||||    
T  4428673 ttggggaatggatgtttgttttctgcctctgcttctgagttgtctgttactaaagggaattgtgtcatctttattgatgatgccttcctcc 4428583  T

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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 51 - 186
Target Start/End: Original strand, 13170761 - 13170896
Alignment:
Q  51 tcaaaggaaattgtattatctttgttggtgatgcattcctcccttttaacaaaatgctatgtgggatgtgtatttttcacttggatcaaggtcgtgtttc 150  Q
    |||||||||||||| | ||||||  || ||||||||||| |  | || || | ||||| |||||||||||| ||||||||||||||||| | ||  ||||    
T  13170761 tcaaaggaaattgtgtcatctttagtgatgatgcattccactatgttgacgagatgctttgtgggatgtgtgtttttcacttggatcaatgccggctttc 13170860  T
Q  151 ccctttgtctgattatcctgaatactacaacttgtt 186  Q
    |||||| ||||||| ||| || |||| |||||||||    
T  13170861 ccctttatctgattgtcccgagtacttcaacttgtt 13170896  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 186
Target Start/End: Original strand, 44688961 - 44689043
Alignment:
Q  104 atgctatgtgggatgtgtatttttcacttggatcaaggtcgtgtttcccctttgtctgattatcctgaatactacaacttgtt 186  Q
    ||||| |||||||||||| ||||||||||||||||| |  | |||||||||||||| |||||||||||  ||| |||||||||    
T  44688961 atgctttgtgggatgtgtgtttttcacttggatcaacgcagagtttcccctttgtccgattatcctgatcactccaacttgtt 44689043  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 20694375 - 20694446
Alignment:
Q  2 ttggggaatggatgttcgttttttgcttctgcttcagatttgtctgttttcaaaggaaattgtattatcttt 73  Q
    |||||||||||||||||||||| |||||||||||| ||||||| ||||  |||||| |||||| | ||||||    
T  20694375 ttggggaatggatgttcgttttctgcttctgcttcggatttgtgtgttgccaaagggaattgtgtcatcttt 20694446  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 9159589 - 9159647
Alignment:
Q  16 ttcgttttttgcttctgcttcagatttgtctgttttcaaaggaaattgtattatctttg 74  Q
    |||||||| || ||||||||||||||||| ||||| |||||| |||||||| |||||||    
T  9159589 ttcgttttctgtttctgcttcagatttgtgtgtttccaaagggaattgtatcatctttg 9159647  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 9170839 - 9170781
Alignment:
Q  16 ttcgttttttgcttctgcttcagatttgtctgttttcaaaggaaattgtattatctttg 74  Q
    |||||||| || ||||||||||||||||| ||||| | |||| |||||||| |||||||    
T  9170839 ttcgttttctgtttctgcttcagatttgtgtgtttcccaagggaattgtatcatctttg 9170781  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 213164 - 213208
Alignment:
Q  29 tctgcttcagatttgtctgttttcaaaggaaattgtattatcttt 73  Q
    ||||||||| |||||| ||||| |||| |||||||||||||||||    
T  213164 tctgcttcaaatttgtgtgtttccaaatgaaattgtattatcttt 213208  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 450318 - 450363
Alignment:
Q  123 tttttcacttggatcaaggtcgtgtttcccctttgtctgattatcc 168  Q
    |||||||||||||||||||||| ||||| || ||||||||||||||    
T  450318 tttttcacttggatcaaggtcgggtttcacccttgtctgattatcc 450363  T

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