View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3052_low_4 (Length: 595)
Name: NF3052_low_4
Description: NF3052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3052_low_4 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 13 - 578
Target Start/End: Original strand, 21842194 - 21842764
Alignment:
| Q |
13 |
aacaaaacagacaccaagtagtgtaacctgttatctatcgcaactctcaaacaacagaagtgacgagaagctgaacaaataggtgaatacatacataaca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21842194 |
aacaaaacagacaccaagtagtgtaacctgttatctatcccaactctcaaacaacagaagtgacgagaagctgaacaaataggtgaatacatacataaca |
21842293 |
T |
|
| Q |
113 |
aaaagcaatgacacaatggtactaaatagtgttgaaaacaaaaataacactcaccaaatgttccatcggagcgctgaattctcttatcaaaactctgcaa |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
21842294 |
aaaagcaatgacacaatggtactaaatagtgttgaaaacaaaaataacactcaccaaatgttccatcggagcgctgaactctcttatcataactctgcaa |
21842393 |
T |
|
| Q |
213 |
gtgatgaattatcggagccagatatgcaatagtcttccctgtgcccgtagcagcattaaccagtctaaattttctcattaaagaatccactt-----nnn |
307 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21842394 |
gtgatgaattatcggagccaggtatgcaatagtcttccctgtgcccgtagcagcattaaccagtctaaattttctcattaaagaatccacttaaaaacaa |
21842493 |
T |
|
| Q |
308 |
nnnnnnnnncccaacaagatatagcatgaagtaacatcatagttcctccatttcaaatcattgacagttttannnnnnnacacacattaagaaatcattt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| |||||||||||||||| |
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| T |
21842494 |
aacaaaaaacccaacaagatatagcatgaagtaacatcatagtccctccatttcaaatcattgacagtttaatttttttacactcattaagaaatcattt |
21842593 |
T |
|
| Q |
408 |
aacaaatgtatgtttattccaatataaaccttaacattatcattaattattttataaacgagtttaatagatatgcgctgacattgtcatcaatatgctt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
21842594 |
aacaaatgtatgtttattccaatataaaccttaacattatcattaattattttataaacgagtttaatagatatgcgctgacattgtcatcaatatgcct |
21842693 |
T |
|
| Q |
508 |
agtatatataaccaaatactcaattctcattgaacgtatgtgtaaaattagtttacactgacggtgcatat |
578 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
21842694 |
agtatatataaccaaatactcaattctcattgaacgtatgtgtaaaattagtttacactgacagtgcatat |
21842764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 13 - 578
Target Start/End: Original strand, 21898057 - 21898627
Alignment:
| Q |
13 |
aacaaaacagacaccaagtagtgtaacctgttatctatcgcaactctcaaacaacagaagtgacgagaagctgaacaaataggtgaatacatacataaca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21898057 |
aacaaaacagacaccaagtagtgtaacctgttatctatcccaactctcaaacaacagaagtgacgagaagctgaacaaataggtgaatacatacataaca |
21898156 |
T |
|
| Q |
113 |
aaaagcaatgacacaatggtactaaatagtgttgaaaacaaaaataacactcaccaaatgttccatcggagcgctgaattctcttatcaaaactctgcaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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|
| T |
21898157 |
aaaagcaatgacacaatggtactaaatagtgttgaaaacaaaaataacactcaccaaatgttccatcggagcgctgaactctcttatcataactctgcaa |
21898256 |
T |
|
| Q |
213 |
gtgatgaattatcggagccagatatgcaatagtcttccctgtgcccgtagcagcattaaccagtctaaattttctcattaaagaatccactt-----nnn |
307 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21898257 |
gtgatgaattatcggagccaggtatgcaatagtcttccctgtgcccgtagcagcattaaccagtctaaattttctcattaaagaatccacttaaaaacaa |
21898356 |
T |
|
| Q |
308 |
nnnnnnnnncccaacaagatatagcatgaagtaacatcatagttcctccatttcaaatcattgacagttttannnnnnnacacacattaagaaatcattt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| |||||||||||||||| |
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|
| T |
21898357 |
aacaaaaaacccaacaagatatagcatgaagtaacatcatagtccctccatttcaaatcattgacagtttaatttttttacactcattaagaaatcattt |
21898456 |
T |
|
| Q |
408 |
aacaaatgtatgtttattccaatataaaccttaacattatcattaattattttataaacgagtttaatagatatgcgctgacattgtcatcaatatgctt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
21898457 |
aacaaatgtatgtttattccaatataaaccttaacattatcattaattattttataaacgagtttaatagatatgcgctgacattgtcatcaatatgcct |
21898556 |
T |
|
| Q |
508 |
agtatatataaccaaatactcaattctcattgaacgtatgtgtaaaattagtttacactgacggtgcatat |
578 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
21898557 |
agtatatataaccaaatactcaattctcattgaacgtatgtgtaaaattagtttacactgacagtgcatat |
21898627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 6e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 137 - 297
Target Start/End: Original strand, 18889737 - 18889898
Alignment:
| Q |
137 |
aatagtgttgaaaacaaaaataaca-ctcaccaaatgttccatcggagcgctgaattctcttatcaaaactctgcaagtgatgaattatcggagccagat |
235 |
Q |
| |
|
|||||| ||||||| || ||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| | |
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|
| T |
18889737 |
aatagtattgaaaagaacaataacaacacaccaaatgttccatcggagcgctgaattctcttatcataactctgcaagtgatgaattattggagccaggt |
18889836 |
T |
|
| Q |
236 |
atgcaatagtcttccctgtgcccgtagcagcattaaccagtctaaattttctcattaaagaa |
297 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18889837 |
atgcaatagtcttccccgtgccagtagcagcattaaccagtctaaattttctcattaaagaa |
18889898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 530 - 570
Target Start/End: Original strand, 18358466 - 18358506
Alignment:
| Q |
530 |
attctcattgaacgtatgtgtaaaattagtttacactgacg |
570 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||| |
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|
| T |
18358466 |
attctcattggacgtcagtgtaaaattagtttacactgacg |
18358506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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