View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3052_low_5 (Length: 542)
Name: NF3052_low_5
Description: NF3052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3052_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 150 - 523
Target Start/End: Original strand, 353996 - 354369
Alignment:
| Q |
150 |
tgtgatgtttgtttttgaaggttaagtttgccactataacaaagaagcttgatcaaaagactcagaaactcggacccgcagttggttatgtctgatctgt |
249 |
Q |
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| T |
353996 |
tgtgatgtttgtttttgaaggttaagtttgccactataacaaagaagcttgatcagaagactcagaaactcggacccgcagttggttatgtctgatctat |
354095 |
T |
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| Q |
250 |
tgaaggttgaagggaaggagacaagtgaaattcatacattatgtaactgtaaagtagagaattagctttattctttccctctattactccataattgtga |
349 |
Q |
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| T |
354096 |
tgaaggttgaagggaaggagacaagtgaaattcatacattatgtaactgtaaagtagagaattagctttattctttccctctattactccataattgtga |
354195 |
T |
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| Q |
350 |
tcattgctggagcagtgttatggattcttcaacgcataacaaatgatgagtttcagttgtctccatagaaacatgtccaaatagtgttgagtcattgtgt |
449 |
Q |
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| T |
354196 |
tcattgctggagcagtgttatggattcttcaatgcataacaaatgatgagtttcagttgtctccatagaaacatgtccaaatagtgttgagtcattgtgt |
354295 |
T |
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| Q |
450 |
gtgtttgtaatgtctggtcaaggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaagg |
523 |
Q |
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| T |
354296 |
gtgtttgtaatgtctggtcaaggaaagggaggtgcaaagtgacatagcaaggttctttgcggtaacattcaagg |
354369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 457 - 523
Target Start/End: Original strand, 10580686 - 10580752
Alignment:
| Q |
457 |
taatgtctggtcaaggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaagg |
523 |
Q |
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| T |
10580686 |
taatgtctggtcaatgaaagggaggtgcaaagtgatattgcaaggttctttgcggtaacattcaagg |
10580752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 344 - 394
Target Start/End: Original strand, 10580612 - 10580662
Alignment:
| Q |
344 |
ttgtgatcattgctggagcagtgttatggattcttcaacgcataacaaatg |
394 |
Q |
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|||| ||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
10580612 |
ttgttatcattgttggagcagtgtcatggattcttcaacgcataacaaatg |
10580662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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