View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3052_low_7 (Length: 497)
Name: NF3052_low_7
Description: NF3052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3052_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 5690034 - 5689805
Alignment:
| Q |
1 |
agctgtgactggtggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5690034 |
agctgtgactggtggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttg |
5689935 |
T |
|
| Q |
101 |
agaggtattaaggatttgccacaagagcttcttggtaagcatgttgagccttctactgctgttgaagcttctcctgctgctaaggctcttgagcctcatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5689934 |
agaggtattaaggatttgccacaagagcttcttggtaaacatgttgagccttctcctgctgttgaagcttctcctgctgctaaagctcttgagcctcatg |
5689835 |
T |
|
| Q |
201 |
ctgtcattgctggttttaccaattagttaa |
230 |
Q |
| |
|
||||||||||||||||||| |||||||||| |
|
|
| T |
5689834 |
ctgtcattgctggttttacaaattagttaa |
5689805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 258 - 406
Target Start/End: Complemental strand, 5689776 - 5689624
Alignment:
| Q |
258 |
agtggagaaataataagtggtttgatg---gattttgtaatggagatttttctttttgcataatgcttggaatgagtagttgtttgaatatgacaaggnn |
354 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5689776 |
agtggagaaataataagtggtttgatgattgattttgtaatggagatttttctttttgcataatgcttggtatgagtagttgtttgaatatgacaaggaa |
5689677 |
T |
|
| Q |
355 |
nnnnnntgatgcaaaagtaccttatggttgtcatcattg-ttttggaccataa |
406 |
Q |
| |
|
||||||||||||||| | ||||||||||||||| |||||||||||| |
|
|
| T |
5689676 |
aaaaaatgatgcaaaagtaccatgtggttgtcatcattgaatttggaccataa |
5689624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 3 - 219
Target Start/End: Complemental strand, 25914716 - 25914500
Alignment:
| Q |
3 |
ctgtgactggtggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgag |
102 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||| || ||||||||| | ||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
25914716 |
ctgtgactggtggtactggaatttttgaaggtgttacaggccaagtgaagctcaatcaaattgtttttccatttaagattttctacacattttatttgaa |
25914617 |
T |
|
| Q |
103 |
aggtattaaggatttgccacaagagcttcttggtaagcatgttgagccttctactgctgttgaagcttctcctgctgctaaggctcttgagcctcatgct |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||| || |||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
25914616 |
gggtattaaggatttgccacaagagcttcttggtaaaccagttgagcctaaccctaatgttgaagcttctcctgctgctaaagctcttgagccacatgct |
25914517 |
T |
|
| Q |
203 |
gtcattgctggttttac |
219 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
25914516 |
accattgctggttttac |
25914500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 2 - 151
Target Start/End: Original strand, 6792654 - 6792803
Alignment:
| Q |
2 |
gctgtgactggtggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttga |
101 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| | |||||||| ||| | ||||||||||| |||||||| ||||| || || ||||||||| | | |
|
|
| T |
6792654 |
gctgtgactggtggaactggaatatttgaaggtgtttatggtcaagttaagcttcatcaaattgtgtttccatttaagatattttacacattttatctta |
6792753 |
T |
|
| Q |
102 |
gaggtattaaggatttgccacaagagcttcttggtaagcatgttgagcct |
151 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| ||| | | |||||||| |
|
|
| T |
6792754 |
agggtattaaggatttgccacatgagtttcttgttaatcctattgagcct |
6792803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 6800131 - 6800246
Alignment:
| Q |
8 |
actggtggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgagaggta |
107 |
Q |
| |
|
|||||||| |||||||||||||||||||| | |||||||| ||| | ||||||||||| |||||||| ||| | || || ||||||||| | | |||| |
|
|
| T |
6800131 |
actggtggaactggaatatttgaaggtgtttatggtcaagttaagcttcatcaaattgtgtttccatttaagctattttacacattttatcttatgggta |
6800230 |
T |
|
| Q |
108 |
ttaaggatttgccaca |
123 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
6800231 |
ttaaggatttgccaca |
6800246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University