View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3052_low_8 (Length: 455)

Name: NF3052_low_8
Description: NF3052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3052_low_8
NF3052_low_8
[»] chr8 (17 HSPs)
chr8 (17-446)||(4689010-4689439)
chr8 (177-418)||(4726206-4726449)
chr8 (97-420)||(4736760-4737085)
chr8 (233-446)||(4745740-4745953)
chr8 (305-412)||(4715065-4715172)
chr8 (130-446)||(4681379-4681688)
chr8 (236-411)||(10446789-10446964)
chr8 (232-397)||(4924864-4925029)
chr8 (227-421)||(4889829-4890023)
chr8 (229-353)||(10452495-10452619)
chr8 (233-402)||(21439303-21439472)
chr8 (229-353)||(4776433-4776557)
chr8 (229-402)||(4913367-4913540)
chr8 (263-352)||(4996410-4996499)
chr8 (309-443)||(4875137-4875271)
chr8 (263-373)||(4703739-4703849)
chr8 (94-159)||(4924724-4924789)


Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 17 - 446
Target Start/End: Complemental strand, 4689439 - 4689010
Alignment:
Q  17 actttacacacaaattttccatccctaattatagataccattgagagtttttgtcnnnnnnntatatatataccattgagaattagtttatgttttcatc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  4689439 actttacacacaaattttccatccctaattatagataccattgagagtttttgtcaaaaaaatatatatataccattgagaattagtttatgttttcatc 4689340  T
Q  117 ataatattcattgcagatagcagaaaaagttctaagataattagatgttggtaaaaaataataattaatgcagttgaaaatagatcaagaggattcaata 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4689339 ataatattcattgcagatagcagaaaaagttctaagataattagatgttagtaaaaaataataattaatgcagttgaaaatagatcaagaggattcaata 4689240  T
Q  217 tttatggagagaaggtagtatgtttttcaaataaactaaagggattgcttaccatcatcttgttcagtttctgattgtgggaagtccattactttataaa 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4689239 tttatggagagaaggtagtatgtttttcaaataaactaaagggattgcttaccatcatcttgttcagtttctgattgtgggaagtccattactttataaa 4689140  T
Q  317 cctcataggcattgaggattggtggaagggttgaattttccgtctttaaaagggaaaatagataccttgcggctccagtcaaaggttttgtactaactat 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4689139 cctcataggcattgaggattggtggaagggttgaattttccgtctttaaaagggaaaatagataccttgcggctccagtcaaaggttttgtactaactat 4689040  T
Q  417 ggtatgtactgcccgatgtacaggtatctc 446  Q
    |||||| |||||| ||||||||||||||||    
T  4689039 ggtatgaactgcctgatgtacaggtatctc 4689010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 177 - 418
Target Start/End: Complemental strand, 4726449 - 4726206
Alignment:
Q  177 ataattaatgcagttgaaaatagatcaa-gaggattcaatatttatggag--agaaggtagtatgtttttcaaataaactaaagggattgcttaccatca 273  Q
    |||||| ||||||||||||||| ||||| |||||| | ||||||| |||   || |||||||||||||||||| ||||| |||||| | |||||||||||    
T  4726449 ataattcatgcagttgaaaatatatcaaagaggatactatatttaaggacgaaggaggtagtatgtttttcaattaaac-aaagggctagcttaccatca 4726351  T
Q  274 tcttgttcagtttctgattgtgggaagtccattactttataaacctcataggcattgaggattggtggaagggttgaattttccgtctttaaaagggaaa 373  Q
     | |||| ||||||||| || | ||||||  ||| |||||| |||||| |||||||||||||||||||||||||||| ||||| ||||| ||||||||||    
T  4726350 ccctgttgagtttctgaatgcgagaagtcttttagtttatatacctcaaaggcattgaggattggtggaagggttgacttttctgtcttaaaaagggaaa 4726251  T
Q  374 atagataccttgcggctccagtcaaaggttttgtactaactatgg 418  Q
     | ||||||||| |||||||||||||||||||||||||| |||||    
T  4726250 cttgataccttgtggctccagtcaaaggttttgtactaaatatgg 4726206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 97 - 420
Target Start/End: Complemental strand, 4737085 - 4736760
Alignment:
Q  97 aattagtttatgttttcatcataatattcattgcagatagcagaaaaagttctaagataattag----atgttggtaaaaaataataattaatgcagttg 192  Q
    ||||||||||||||||||||||| | ||| || || ||  ||||||||  | ||||||||||||    ||||| ||||| ||  |||||| ||||| ||     
T  4737085 aattagtttatgttttcatcatagttttctttacaaattacagaaaaatatataagataattaggtgtatgttagtaaagaa--ataattcatgcaatta 4736988  T
Q  193 aaaatagatcaagaggattcaatatttatgga--gagaaggtagtatgtttttcaaataaactaaagggattgcttaccatcatcttgttcagtttctga 290  Q
     ||||| | ||||||||| | ||||||| |||  ||| |||||||||||||||||| ||||| |||||| | |||||||||||||||||| |||||||||    
T  4736987 taaatata-caagaggatactatatttaaggacggaggaggtagtatgtttttcaattaaac-aaagggctagcttaccatcatcttgttgagtttctga 4736890  T
Q  291 ttgtgggaagtccattactttataaacctcataggcattgaggattggtggaagggttgaattttccgtctttaaaagggaaaatagataccttgcggct 390  Q
    |  || ||||||  ||  ||||||||||||| | ||||| ||||| ||||||||||||||||| ||  ||||  |||||||||   ||||||||| ||||    
T  4736889 tattgagaagtctctttgtttataaacctcaaaagcattcaggatgggtggaagggttgaattatctttcttcgaaagggaaacatgataccttggggct 4736790  T
Q  391 ccagtcaaaggttttgtactaactatggta 420  Q
    |||||||||||||||||||||| |||||||    
T  4736789 ccagtcaaaggttttgtactaaatatggta 4736760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 233 - 446
Target Start/End: Complemental strand, 4745953 - 4745740
Alignment:
Q  233 agtatgtttttcaaataaactaaagggattgcttaccatcatcttgttcagtttctgattgtgggaagtccattactttataaacctcataggcattgag 332  Q
    ||||||||||||||||||||||| ||| | ||||| |||||||||||| ||||||||||| || ||||||  |||  | |||||||||||||||||||||    
T  4745953 agtatgtttttcaaataaactaatgggctagcttatcatcatcttgttgagtttctgattttgagaagtctcttagctaataaacctcataggcattgag 4745854  T
Q  333 gattggtggaagggttgaattttccgtctttaaaagggaaaatagataccttgcggctccagtcaaaggttttgtactaactatggtatgtactgcccga 432  Q
    ||||||||||||||||||||| || |||||  | ||||||| | ||||||||  |||||||||||||||| || |||||  ||| |||| ||||| |||     
T  4745853 gattggtggaagggttgaattctctgtcttatagagggaaatttgataccttttggctccagtcaaaggtcttatactagatatagtatttactgaccgg 4745754  T
Q  433 tgtacaggtatctc 446  Q
    | | ||||||||||    
T  4745753 tatccaggtatctc 4745740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 305 - 412
Target Start/End: Complemental strand, 4715172 - 4715065
Alignment:
Q  305 ttactttataaacctcataggcattgaggattggtggaagggttgaattttccgtctttaaaagggaaaatagataccttgcggctccagtcaaaggttt 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||  ||||||||||||||||||||| ||||||||||||||||||    
T  4715172 ttactttataaacctcataggcattgaggattggtggaagggttgaattctctgtcttagaaagggaaaatagataccttgtggctccagtcaaaggttt 4715073  T
Q  405 tgtactaa 412  Q
    ||||||||    
T  4715072 tgtactaa 4715065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 130 - 446
Target Start/End: Complemental strand, 4681688 - 4681379
Alignment:
Q  130 cagatagcagaaaaagttctaagataattag----atgttggtaaaaaataataattaatgcagttgaaaatagatcaagaggattcaatatttatggag 225  Q
    ||||| |||||||||| | |||||||||||     ||||||||||| ||  |||||||||||||||||||| | ||||||||||| |  |||||| |       
T  4681688 cagattgcagaaaaagatgtaagataattaagggtatgttggtaaagaa--ataattaatgcagttgaaaacatatcaagaggatcctctatttagg--- 4681594  T
Q  226 agaaggtagtatgtttttcaaataaactaaagggattgcttaccatcatcttgttcagtttctgattgtgggaagtccattactttataaacctcatagg 325  Q
       |||||||||| |||| || || |||||||   | ||||||||||||| |||| |||||||||||||| ||| |   |||||||||||||||||  ||    
T  4681593 ---aggtagtatgcttttaaactacactaaag---tcgcttaccatcatcctgttgagtttctgattgtgagaaattttttactttataaacctcaacgg 4681500  T
Q  326 cattgaggattggtggaagggttgaattttccgtctttaaaagggaaaatagataccttgcggctccagtcaaaggttttgtactaactatggtatgtac 425  Q
    |||| ||||| ||||||||||||||||| || |||||  |||||| ||||| |||| |||  ||||||||||||||| ||||||| | |||| ||| |||    
T  4681499 cattcaggatgggtggaagggttgaattatctgtcttggaaagggtaaatatatactttgtcgctccagtcaaaggtattgtactgaatatgctatctac 4681400  T
Q  426 tgcccgatgtacaggtatctc 446  Q
    || ||| | ||||||||||||    
T  4681399 tgaccggtatacaggtatctc 4681379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 236 - 411
Target Start/End: Complemental strand, 10446964 - 10446789
Alignment:
Q  236 atgtttttcaaataaactaaagggattgcttaccatcatcttgttcagtttctgattgtgggaagtccattactttataaacctcataggcattgaggat 335  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||  |||| ||||||  ||||||||||||  |||  |||||||| |||    
T  10446964 atgtttttcaaataaactaaagggcttgcttaccatcatcttgtttagtttctggctgtgagaagtcttttactttataaatttcaatggcattgacgat 10446865  T
Q  336 tggtggaagggttgaattttccgtctttaaaagggaaaatagataccttgcggctccagtcaaaggttttgtacta 411  Q
    |||||||||||||||||| ||  |||| |||||||||| | |||| | || | ||||||| |||||| ||||||||    
T  10446864 tggtggaagggttgaattctctatcttgaaaagggaaattggatagcgtgtgcctccagttaaaggtgttgtacta 10446789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 232 - 397
Target Start/End: Original strand, 4924864 - 4925029
Alignment:
Q  232 tagtatgtttttcaaataaactaaagggattgcttaccatcatcttgttcagtttctgattgtgggaagtccattactttataaacctcataggcattga 331  Q
    ||||||||| || | |||||||| |||| | |||||||||||||||||| |||||||| ||||  ||| |   |||||||||||||||||||||||||||    
T  4924864 tagtatgttgttgagataaactagagggctagcttaccatcatcttgttgagtttctggttgtaagaattgttttactttataaacctcataggcattga 4924963  T
Q  332 ggattggtggaagggttgaattttccgtctttaaaagggaaaatagataccttgcggctccagtca 397  Q
    |||| ||||||||||||||||| || ||||| | |||||||||| ||||||||  |||||||||||    
T  4924964 ggatgggtggaagggttgaattctctgtcttaataagggaaaattgataccttttggctccagtca 4925029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 227 - 421
Target Start/End: Original strand, 4889829 - 4890023
Alignment:
Q  227 gaaggtagtatgtttttcaaataaactaaagggattgcttaccatcatcttgttcagtttctgattgtgggaagtccattactttataaacctcataggc 326  Q
    |||| ||||||| |||||| ||||||||||||  |  |||||||||||| || | |||||||||||||| ||||||  |||||||||||| |||| ||||    
T  4889829 gaagatagtatggttttcatataaactaaaggactaacttaccatcatcctgatgagtttctgattgtgagaagtcttttactttataaatctcaaaggc 4889928  T
Q  327 attgaggattggtggaagggttgaattttccgtctttaaaagggaaaatagataccttgcggctccagtcaaaggttttgtactaactatggtat 421  Q
    ||||||||||||||||||||||||||| || |||||    ||||||| | |||| |||  |||||||||||||||| ||| ||||| ||| ||||    
T  4889929 attgaggattggtggaagggttgaattctctgtcttagtcagggaaatttgatagcttttggctccagtcaaaggtgttggactaaatattgtat 4890023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 229 - 353
Target Start/End: Complemental strand, 10452619 - 10452495
Alignment:
Q  229 aggtagtatgtttttcaaataaactaaagggattgcttaccatcatcttgttcagtttctgattgtgggaagtccattactttataaacctcataggcat 328  Q
    ||||| ||||||||||||||||||||||||| || |||||||||||||||||| ||||||| || || ||||||  ||||||||||||  | |  |||||    
T  10452619 aggtaatatgtttttcaaataaactaaagggcttacttaccatcatcttgttctgtttctggttttgagaagtcttttactttataaattttaatggcat 10452520  T
Q  329 tgaggattggtggaagggttgaatt 353  Q
    ||||||| |||||||||||||||||    
T  10452519 tgaggatgggtggaagggttgaatt 10452495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 233 - 402
Target Start/End: Original strand, 21439303 - 21439472
Alignment:
Q  233 agtatgtttttcaaataaactaaagggattgcttaccatcatcttgttcagtttctgattgtgggaagtccattactttataaacctcataggcattgag 332  Q
    ||||||||||||||||||||||||| |   ||||||||||||| |||| |||||||||||||| |||| |  || |  |||||| |||| | ||||| ||    
T  21439303 agtatgtttttcaaataaactaaagagccagcttaccatcatcctgttgagtttctgattgtgagaagacttttcccatataaatctcaaatgcatttag 21439402  T
Q  333 gattggtggaagggttgaattttccgtctttaaaagggaaaatagataccttgcggctccagtcaaaggt 402  Q
    ||| ||||||||||||||||| |  ||| |  |||| |||| | ||||||||| ||||||||||||||||    
T  21439403 gatgggtggaagggttgaattctgtgtcctagaaagagaaatttgataccttgtggctccagtcaaaggt 21439472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 229 - 353
Target Start/End: Original strand, 4776433 - 4776557
Alignment:
Q  229 aggtagtatgtttttcaaataaactaaagggattgcttaccatcatcttgttcagtttctgattgtgggaagtccattactttataaacctcataggcat 328  Q
    |||||||||||||||||||||||||||||   | ||||||||||||| |||| ||||||| |||||| ||||||  || |  |||||| |||| ||||||    
T  4776433 aggtagtatgtttttcaaataaactaaagtcctagcttaccatcatcctgttgagtttctaattgtgagaagtcttttgccatataaatctcaaaggcat 4776532  T
Q  329 tgaggattggtggaagggttgaatt 353  Q
    | ||||| |||||||||||||||||    
T  4776533 ttaggatgggtggaagggttgaatt 4776557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 229 - 402
Target Start/End: Original strand, 4913367 - 4913540
Alignment:
Q  229 aggtagtatgtttttcaaataaactaaagggattgcttaccatcatcttgttcagtttctgattgtgggaagtccattactttataaacctcataggcat 328  Q
    |||||| |||||||||| |||||||||||||   ||||||||||||| |||| |||||||||||||| ||||||  ||    | |||| |||| ||||||    
T  4913367 aggtagaatgtttttcagataaactaaagggccagcttaccatcatcctgttgagtttctgattgtgagaagtcttttgacatgtaaatctcaaaggcat 4913466  T
Q  329 tgaggattggtggaagggttgaattttccgtctttaaaagggaaaatagataccttgcggctccagtcaaaggt 402  Q
    | ||||| ||||||||||||||||| |  |||||  |||| |||| | ||||||||| |||||||  |||||||    
T  4913467 ttaggatgggtggaagggttgaattctttgtcttggaaagagaaatttgataccttgtggctccaaccaaaggt 4913540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 263 - 352
Target Start/End: Complemental strand, 4996499 - 4996410
Alignment:
Q  263 gcttaccatcatcttgttcagtttctgattgtgggaagtccattactttataaacctcataggcattgaggattggtggaagggttgaat 352  Q
    |||||||||||||  | |||||||||||||||| |||||   ||||||||||||  ||| ||||||||||||||||||||||||||||||    
T  4996499 gcttaccatcatcccgatcagtttctgattgtgagaagttttttactttataaatttcaaaggcattgaggattggtggaagggttgaat 4996410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 443
Target Start/End: Original strand, 4875137 - 4875271
Alignment:
Q  309 tttataaacctcataggcattgaggattggtggaagggttgaattttccgtctttaaaagggaaaatagataccttgcggctccagtcaaaggttttgta 408  Q
    |||||||| |||| ||||||| ||||| ||||||||||||||||  || ||| | |||||||||| |  |||||||   ||||||||||||||||||  |    
T  4875137 tttataaaactcaaaggcattcaggatcggtggaagggttgaatcctctgtcctaaaaagggaaattttatacctttttgctccagtcaaaggttttcga 4875236  T
Q  409 ctaactatggtatgtactgcccgatgtacaggtat 443  Q
    ||||  | ||||| ||||| ||| | |||||||||    
T  4875237 ctaaaaaaggtatctactgaccggtatacaggtat 4875271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 373
Target Start/End: Complemental strand, 4703849 - 4703739
Alignment:
Q  263 gcttaccatcatcttgttcagtttctgattgtgggaagtccattactttataaacctcataggcattgaggattggtggaagggttgaattttccgtctt 362  Q
    ||||||||||||| || | ||||||||| |||| ||||||  |||||||||||||||||   |||||    || ||||||||||||||||| || |||||    
T  4703849 gcttaccatcatcctgatgagtttctgactgtgagaagtcttttactttataaacctcaatagcattagctatgggtggaagggttgaattatctgtctt 4703750  T
Q  363 taaaagggaaa 373  Q
     || |||||||    
T  4703749 aaagagggaaa 4703739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 4924724 - 4924789
Alignment:
Q  94 gagaattagtttatgttttcatcataatattcattgcagatagcagaaaaagttctaagataatta 159  Q
    ||||||||  |||||||| |||||||||||| ||| || || |||||||||| | |||||||||||    
T  4924724 gagaattaaattatgtttgcatcataatatttattacatattgcagaaaaagatgtaagataatta 4924789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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