View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3053_high_1 (Length: 443)
Name: NF3053_high_1
Description: NF3053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3053_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Complemental strand, 32326303 - 32325886
Alignment:
| Q |
18 |
aaaagtgcaagagattcatcataatggggtgaacttatcaacccaaagaggttttgtgacaaaattgaaatctgggttcaaagaagcacttttccctgat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32326303 |
aaaagtgcaagagattcatcataatggggtgaacttatcaacccaaagaggttttgtgacaaaattgaaatctgggttcaaagaagcacttttccctgat |
32326204 |
T |
|
| Q |
118 |
gatccttttaggcaaattatggaagaggnnnnnnnntctcgtaggttgattaaaggggtgcaatattttattccaatctttgagtggttaccaaattatt |
217 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32326203 |
gatccttttaggcaaattatggaagaggaaaaaaaatctcgtaggttgattaaaggggtgcaatattttattccaatctttgagtggttaccaaattatt |
32326104 |
T |
|
| Q |
218 |
ctttgagattatttttctctgacttaattgctggtctcaccattgctagtcttgccattcctcaaggcattagttatgccaaacttgctgatcttcctcc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32326103 |
ctttgagattatttttctctgacttaattgctggtctcaccattgctagtcttgccattcctcaaggcattagttatgccaaacttgctaatcttcctcc |
32326004 |
T |
|
| Q |
318 |
tctcattggcctttgtaagtcattcttatcattacattacatgcattcttaattacttcggnnnnnnnncttctgcgcgcaatggcagagattatcactt |
417 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||| |||||||| |||||||||||||||| |
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| T |
32326003 |
tctcattggcctttgtaagtcattcttattattacattacattcattcttaattacttcggttttttttcttcttcgcgcaattgcagagattatcactt |
32325904 |
T |
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| Q |
418 |
caatttttcatctcactc |
435 |
Q |
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||||||||||| |||||| |
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| T |
32325903 |
caatttttcatttcactc |
32325886 |
T |
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Back To:
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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 317
Target Start/End: Complemental strand, 38221283 - 38221210
Alignment:
| Q |
244 |
attgctggtctcaccattgctagtcttgccattcctcaaggcattagttatgccaaacttgctgatcttcctcc |
317 |
Q |
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|||||||| |||||||||||||| | || ||||||||||||||||||||||| || |||||| | |||||||| |
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| T |
38221283 |
attgctgggatcaccattgctagtttggctattcctcaaggcattagttatgcaaagcttgctaaccttcctcc |
38221210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 305
Target Start/End: Original strand, 31744641 - 31744672
Alignment:
| Q |
274 |
attcctcaaggcattagttatgccaaacttgc |
305 |
Q |
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| T |
31744641 |
attcctcaaggcattagttatgccaaacttgc |
31744672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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