View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3053_high_6 (Length: 275)
Name: NF3053_high_6
Description: NF3053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3053_high_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 46875208 - 46874951
Alignment:
| Q |
18 |
aatagttattaaactttaaagcataactagtaaagctttagcatcacatacagaaataaagcaagagaatgaacattgaacatagctcatagtttaagta |
117 |
Q |
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| T |
46875208 |
aatagttattaaactttaaagcataactagtaaagctttagcatcacatacagaaataaagcaagagaatgaacattgaacatagctcatagtttaagta |
46875109 |
T |
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| Q |
118 |
agccgattaaatgaccggttgtaagcctctgtatgcaactctgtaaagaacgaagaggagtaacagctagagtactatccaagaaacctgtctcatcttg |
217 |
Q |
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| T |
46875108 |
agtggattaaatgaccgattgtaagcctctgtatgcaactctgtaaagaacgaagaggagtaacagctagagtactatccaagaaacctgtctcatcttg |
46875009 |
T |
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| Q |
218 |
acaggaacaatattaagcaaaactaacatcatagtttgccacataacagatgatatat |
275 |
Q |
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| T |
46875008 |
acaggaacaatattaagcaaaactaacatcatagtttgccacataacagatgatatat |
46874951 |
T |
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