View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3053_high_8 (Length: 247)
Name: NF3053_high_8
Description: NF3053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3053_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 48272023 - 48271782
Alignment:
| Q |
1 |
tccggattagttgttcccgaccttgagctaccgttggatccaatgctcaagtctttgattcctttagctatgtctggagtgctagtacccgatgacgcag |
100 |
Q |
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| T |
48272023 |
tccggattagttgttcccgaccttgagctaccgttggatccaatgctcaagtctttgattcctttagctatgtctggagtgctagtacccgatgacgcgg |
48271924 |
T |
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| Q |
101 |
cggttctgacctgctcgaaatgtagtacctgcacaattacacgtgtcggtagcctctcgttttgcactgcatgcaaggatgcatcaactgacagctttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48271923 |
cggttctgacctgctcgaaatgtagtacctgcacaattacacgtgtcggtagcctctcgttttgcactgcatgcaaggatgcatcaactgacagctttct |
48271824 |
T |
|
| Q |
201 |
gcaatccattagctggcatatactcttcttttcacctttgct |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
48271823 |
gcaatccattagctggcatatactcttcttttcacctttgct |
48271782 |
T |
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