View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3053_low_10 (Length: 241)
Name: NF3053_low_10
Description: NF3053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3053_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 40576991 - 40577207
Alignment:
| Q |
1 |
aatgaagcattaacttttataatcctaatgttggaaaaaagatgtaacattaagctacattgagacaaaaatctctcctttgcccggtggccgttggcca |
100 |
Q |
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| T |
40576991 |
aatgaagcattaacttttataatcctattgttggaaaaaagatgtaacattaagctacattgagacaaaaatctctcctttgcccggtggccgttggcca |
40577090 |
T |
|
| Q |
101 |
cagtttttggattaattgtcatctctctgttctttttatataatgcttccttggtttgtgctttgaaatttagataattaagttcccaagttgaagattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40577091 |
cagtttttggattaattgtcatctctctgttctttttatataatgcttccttggtttgtgctttgaaatttaga----taagttcccaagttgaagattc |
40577186 |
T |
|
| Q |
201 |
ttatactgaatttggctaccg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
40577187 |
ttatactgaatttggctaccg |
40577207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 22686692 - 22686478
Alignment:
| Q |
1 |
aatgaagcattaacttttataatcctaatgttggaaaaaagatgtaacattaagctacattgagacaaaaatctctcctttgcccggtggccgttggcca |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||| | |||| |
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| T |
22686692 |
aatgaagcattaacttttataatcctattgttggaaaagagatgtaacattaatctacattgagacaaaaatctctcctttgccgggtggccagtagcca |
22686593 |
T |
|
| Q |
101 |
cagtttttggattaattgtcatctctctgttctttttatataatgcttccttggtttgtgctttgaaatttagataattaagttcccaagttgaagattc |
200 |
Q |
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||| |||||||| |||||| |||||||| |||||||||||||||| |||||| ||||||||| ||||||||||| |||||||| ||||||||||||| |
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| T |
22686592 |
caggttttggatcaattgttatctctctattctttttatataatgtttccttagtttgtgctctgaaatttaga----taagttcctaagttgaagattc |
22686497 |
T |
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| Q |
201 |
ttatactgaatttggctac |
219 |
Q |
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||||||||||||||||||| |
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| T |
22686496 |
ttatactgaatttggctac |
22686478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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