View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3053_low_2 (Length: 395)

Name: NF3053_low_2
Description: NF3053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3053_low_2
NF3053_low_2
[»] chr3 (27 HSPs)
chr3 (2-251)||(32052745-32052994)
chr3 (231-384)||(32052584-32052737)
chr3 (270-364)||(40116554-40116644)
chr3 (267-363)||(42510103-42510195)
chr3 (267-363)||(33755429-33755521)
chr3 (299-361)||(19162676-19162738)
chr3 (299-361)||(39600770-39600832)
chr3 (299-361)||(45289180-45289242)
chr3 (298-361)||(19676170-19676233)
chr3 (301-359)||(11581577-11581635)
chr3 (299-361)||(30294210-30294272)
chr3 (303-361)||(46431768-46431826)
chr3 (299-361)||(50960726-50960788)
chr3 (307-360)||(36820067-36820120)
chr3 (308-361)||(41452829-41452882)
chr3 (313-361)||(49042081-49042129)
chr3 (270-363)||(54365062-54365151)
chr3 (264-336)||(53998752-53998820)
chr3 (299-361)||(21200679-21200741)
chr3 (311-361)||(39235281-39235331)
chr3 (325-362)||(23534658-23534695)
chr3 (268-361)||(29475792-29475879)
chr3 (302-363)||(34844660-34844721)
chr3 (299-363)||(54128509-54128574)
chr3 (325-361)||(19737141-19737177)
chr3 (325-361)||(19758044-19758080)
chr3 (264-359)||(41482228-41482321)
[»] chr8 (25 HSPs)
chr8 (267-363)||(35914688-35914780)
chr8 (267-362)||(32931064-32931155)
chr8 (267-362)||(35362738-35362829)
chr8 (267-361)||(35643695-35643785)
chr8 (299-361)||(4011214-4011276)
chr8 (299-361)||(28169523-28169585)
chr8 (267-361)||(30783131-30783221)
chr8 (272-358)||(45512587-45512669)
chr8 (308-359)||(13589619-13589670)
chr8 (302-361)||(27037769-27037828)
chr8 (299-361)||(23023356-23023418)
chr8 (307-361)||(29520788-29520842)
chr8 (311-361)||(30559836-30559886)
chr8 (299-363)||(17491741-17491805)
chr8 (307-361)||(39388921-39388976)
chr8 (299-361)||(10079996-10080058)
chr8 (301-359)||(16351511-16351569)
chr8 (299-361)||(16994533-16994595)
chr8 (260-363)||(29700372-29700471)
chr8 (307-361)||(39967588-39967642)
chr8 (267-361)||(2216391-2216480)
chr8 (267-361)||(38178349-38178439)
chr8 (299-344)||(45419366-45419411)
chr8 (264-361)||(5908746-5908839)
chr8 (325-361)||(45041404-45041440)
[»] chr2 (13 HSPs)
chr2 (302-361)||(21834688-21834747)
chr2 (299-364)||(43752033-43752098)
chr2 (267-361)||(38435055-38435145)
chr2 (299-363)||(26670899-26670963)
chr2 (298-361)||(9556458-9556521)
chr2 (267-359)||(26784431-26784519)
chr2 (267-361)||(18959014-18959104)
chr2 (299-358)||(33287552-33287611)
chr2 (299-361)||(12141675-12141737)
chr2 (299-361)||(19235073-19235135)
chr2 (311-361)||(37470222-37470272)
chr2 (307-361)||(42543374-42543428)
chr2 (299-361)||(43573219-43573280)
[»] chr7 (20 HSPs)
chr7 (299-361)||(28628022-28628084)
chr7 (267-364)||(38135299-38135392)
chr7 (267-361)||(47848777-47848866)
chr7 (299-361)||(12966147-12966209)
chr7 (267-350)||(30814771-30814850)
chr7 (299-361)||(45601607-45601669)
chr7 (267-361)||(1569119-1569209)
chr7 (308-361)||(36239885-36239938)
chr7 (301-361)||(37976368-37976428)
chr7 (299-361)||(9210793-9210855)
chr7 (299-361)||(36136895-36136957)
chr7 (299-361)||(40980017-40980079)
chr7 (273-364)||(26741980-26742069)
chr7 (324-361)||(28355321-28355358)
chr7 (308-361)||(28858185-28858238)
chr7 (299-363)||(1531448-1531512)
chr7 (264-300)||(5418180-5418216)
chr7 (301-361)||(21517469-21517529)
chr7 (325-361)||(28542033-28542069)
chr7 (329-361)||(36101866-36101898)
[»] chr4 (27 HSPs)
chr4 (275-362)||(53540401-53540484)
chr4 (267-362)||(21945726-21945817)
chr4 (299-361)||(45204928-45204990)
chr4 (307-361)||(53518412-53518466)
chr4 (299-361)||(55809079-55809141)
chr4 (302-361)||(28351693-28351752)
chr4 (308-358)||(17666135-17666185)
chr4 (299-361)||(31043203-31043265)
chr4 (307-361)||(31961355-31961409)
chr4 (299-361)||(51421861-51421923)
chr4 (260-358)||(7682002-7682096)
chr4 (300-361)||(21107124-21107185)
chr4 (285-361)||(934520-934591)
chr4 (299-359)||(20999131-20999191)
chr4 (325-361)||(31459151-31459187)
chr4 (299-358)||(35690402-35690461)
chr4 (307-361)||(10209175-10209229)
chr4 (267-362)||(13805353-13805444)
chr4 (326-360)||(27049267-27049301)
chr4 (307-361)||(31897517-31897571)
chr4 (307-361)||(46372163-46372217)
chr4 (299-361)||(47147504-47147566)
chr4 (325-363)||(52360031-52360069)
chr4 (308-361)||(21214675-21214728)
chr4 (300-360)||(26356751-26356811)
chr4 (298-358)||(42293357-42293417)
chr4 (301-361)||(55579165-55579225)
[»] chr1 (29 HSPs)
chr1 (301-361)||(40416504-40416564)
chr1 (299-358)||(9509449-9509508)
chr1 (299-358)||(32404618-32404677)
chr1 (299-359)||(3818947-3819007)
chr1 (299-362)||(36339892-36339954)
chr1 (299-361)||(30834066-30834128)
chr1 (307-361)||(42501247-42501301)
chr1 (299-361)||(52561678-52561740)
chr1 (301-362)||(8203222-8203283)
chr1 (267-300)||(35828696-35828729)
chr1 (299-355)||(8628161-8628217)
chr1 (301-361)||(19969301-19969361)
chr1 (274-363)||(28511888-28511973)
chr1 (301-361)||(41560362-41560422)
chr1 (299-358)||(9599486-9599545)
chr1 (299-361)||(478809-478871)
chr1 (307-361)||(7762526-7762580)
chr1 (299-361)||(8342970-8343032)
chr1 (307-361)||(29128922-29128976)
chr1 (299-361)||(29577231-29577293)
chr1 (298-344)||(34827210-34827256)
chr1 (326-364)||(43375684-43375722)
chr1 (307-364)||(8676951-8677008)
chr1 (267-300)||(8796312-8796345)
chr1 (307-360)||(26299224-26299277)
chr1 (316-364)||(1661567-1661615)
chr1 (325-361)||(4590621-4590657)
chr1 (301-357)||(40228099-40228155)
chr1 (325-361)||(52532705-52532741)
[»] scaffold0018 (1 HSPs)
scaffold0018 (302-364)||(178506-178568)
[»] chr6 (9 HSPs)
chr6 (299-361)||(9593797-9593859)
chr6 (301-361)||(31818664-31818724)
chr6 (299-361)||(34594-34656)
chr6 (307-361)||(38902-38956)
chr6 (299-361)||(5095965-5096027)
chr6 (270-361)||(12133991-12134077)
chr6 (301-359)||(25493941-25493999)
chr6 (307-361)||(31831948-31832002)
chr6 (302-358)||(35199714-35199770)
[»] chr5 (19 HSPs)
chr5 (299-361)||(28013-28075)
chr5 (261-360)||(6889090-6889185)
chr5 (299-364)||(79644-79709)
chr5 (261-351)||(6859478-6859564)
chr5 (267-361)||(7678581-7678671)
chr5 (299-359)||(12576951-12577011)
chr5 (299-362)||(29922415-29922478)
chr5 (267-362)||(6788170-6788261)
chr5 (311-361)||(11675672-11675722)
chr5 (260-355)||(15489587-15489678)
chr5 (299-358)||(27998572-27998631)
chr5 (307-361)||(14725657-14725711)
chr5 (269-364)||(43035086-43035177)
chr5 (300-361)||(2713076-2713137)
chr5 (307-360)||(32759715-32759768)
chr5 (302-363)||(42199420-42199481)
chr5 (277-361)||(9235162-9235240)
chr5 (325-361)||(28186864-28186900)
chr5 (301-361)||(33157920-33157980)
[»] scaffold0325 (1 HSPs)
scaffold0325 (301-357)||(11930-11986)
[»] scaffold1259 (1 HSPs)
scaffold1259 (307-358)||(1611-1662)


Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 32052994 - 32052745
Alignment:
Q  2 tgatattgttgaggctgctagtagagtttctggtgaatttggtgtttataccaaacccgcggtaaaatcttgttctcaattttgttttccgttgatactg 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32052994 tgatattgttgaggctgctagtagagtttctggtgaatttggtgtttataccaaacccgcggtaaaatcttgttctcaattttgttttccgttgatactg 32052895  T
Q  102 atattgccttagatttattattaagtgacaatgttaaaggaaagggaagtatgtttatgttttagatagttattattaagacaatgttaatggtttaagc 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32052894 atattgccttagatttattattaagtgacaatgttaaaggaaagggaagtatgtttatgttttagataattattattaagacaatgttaatggtttaagc 32052795  T
Q  202 gtatgtgaagtgtctgcattaacgacaatagattaggtggaggattactc 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32052794 gtatgtgaagtgtctgcattaacgacaatagattaggtggaggattactc 32052745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 231 - 384
Target Start/End: Complemental strand, 32052737 - 32052584
Alignment:
Q  231 agattaggtggaggattactcnnnnnnnngattaggtggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaacta 330  Q
    |||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32052737 agattaggtggaggattactcaaaaaaaagattaggtggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaacta 32052638  T
Q  331 ttaggaaagatttatagattaatgagttggaccggattccttaattggattcat 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32052637 ttaggaaagatttatagattaatgagttggaccggattccttaatttgattcat 32052584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 364
Target Start/End: Complemental strand, 40116644 - 40116554
Alignment:
Q  270 aggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttggaccg 364  Q
    |||||||||||||| |||||| ||    |||||||| ||||||||||||| ||| |||||||||||| ||||||| |||||||||||||||||||    
T  40116644 aggatagtcagatcactagagcca----aaggaagacctagaaaaactataagagaaactattaggatagatttagagattaatgagttggaccg 40116554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 363
Target Start/End: Complemental strand, 42510195 - 42510103
Alignment:
Q  267 tggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttggacc 363  Q
    ||||||||||||||||| |||||||||    |||||||| ||||||||||||| ||| |||| ||||||||||||||  | || |||||||||||||    
T  42510195 tggaggatagtcagatcactagaggca----aaggaagacctagaaaaactatcagagaaaccattaggaaagatttggaaataaatgagttggacc 42510103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 363
Target Start/End: Complemental strand, 33755521 - 33755429
Alignment:
Q  267 tggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttggacc 363  Q
    |||||||| ||| |||| |||||||||||||||     | ||||||||||||| ||| |||||||||||||| | ||| ||||||||||||||||||    
T  33755521 tggaggatggtcggatcactagaggcagaggaaa----acctagaaaaactataagagaaactattaggaaaaacttagagattaatgagttggacc 33755429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 19162738 - 19162676
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| |||| ||| |||| ||| |||||||||||||||||||| ||||||||||||||||    
T  19162738 aggaagacctaggaaatctataagagaaactattaggaaagatttagagattaatgagttgga 19162676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 39600832 - 39600770
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| ||||||||||||| ||| ||||||||| |||||||||| || |||||||||||||    
T  39600832 aggaagacctagaaaaactataagagaaactattaagaaagatttagaggttaatgagttgga 39600770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 45289242 - 45289180
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| |||  |||||||| ||| |||||||||||||||||||| ||||||||||||||||    
T  45289242 aggaagatctatgaaaactataagagaaactattaggaaagatttagagattaatgagttgga 45289180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 361
Target Start/End: Complemental strand, 19676233 - 19676170
Alignment:
Q  298 aaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    |||||||| ||||||||||| | ||| |||||||||||||| ||||| || |||||||||||||    
T  19676233 aaggaagacctagaaaaactgtaagagaaactattaggaaaaatttagaggttaatgagttgga 19676170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 359
Target Start/End: Original strand, 11581577 - 11581635
Alignment:
Q  301 gaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttg 359  Q
    ||||| ||||||||||||| ||| ||||||||| ||||||| ||||||| |||||||||    
T  11581577 gaagacctagaaaaactataagagaaactattaagaaagatctatagataaatgagttg 11581635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 30294272 - 30294210
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| |||||| |||||| |||||||||||||  |||||||||||| | |||||||||||    
T  30294272 aggaagacctagaagaactataagataaactattaaaaaagatttataggtcaatgagttgga 30294210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 361
Target Start/End: Complemental strand, 46431826 - 46431768
Alignment:
Q  303 agaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||||||||||| ||| |||||||||  |||||| || ||||||||||||||||    
T  46431826 agaactagaaaaactataagagaaactattaaaaaagatctagagattaatgagttgga 46431768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 50960788 - 50960726
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| ||||||||| | | ||| ||||||||||||||| |||| ||||||||||||||||    
T  50960788 aggaagacctagaaaaaatttaagagaaactattaggaaaggtttagagattaatgagttgga 50960726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 360
Target Start/End: Complemental strand, 36820120 - 36820067
Alignment:
Q  307 ctagaaaaactatgagataaactattaggaaagatttatagattaatgagttgg 360  Q
    ||||||||||||| ||| ||||||||| ||||||| || |||||||||||||||    
T  36820120 ctagaaaaactataagagaaactattaagaaagatctagagattaatgagttgg 36820067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 361
Target Start/End: Complemental strand, 41452882 - 41452829
Alignment:
Q  308 tagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    |||||||||||| || |||||||||| ||||||| || ||||||||||||||||    
T  41452882 tagaaaaactataagttaaactattaagaaagatctagagattaatgagttgga 41452829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 361
Target Start/End: Original strand, 49042081 - 49042129
Alignment:
Q  313 aaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| ||| |||||||||||||||||||| || |||||||||||||    
T  49042081 aaactataagagaaactattaggaaagatttagaggttaatgagttgga 49042129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 363
Target Start/End: Complemental strand, 54365151 - 54365062
Alignment:
Q  270 aggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttggacc 363  Q
    |||||||||||| | | ||||||||||    ||||| ||||||||||||| ||| |||||||||||||||| ||  ||||||||| ||| ||||    
T  54365151 aggatagtcagaccacgagaggcagag----gaagacctagaaaaactataagagaaactattaggaaagacttggagattaatgtgttagacc 54365062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 336
Target Start/End: Complemental strand, 53998820 - 53998752
Alignment:
Q  264 aggtggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattagga 336  Q
    ||||||||||||||||| || |||||||||    |||||||| | ||||||||||| ||| ||||||||||||    
T  53998820 aggtggaggatagtcagttcactagaggca----aaggaagacccagaaaaactataagagaaactattagga 53998752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 21200679 - 21200741
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| ||||||||||||| ||| ||||||||  ||||||| || | ||||||||||||||    
T  21200679 aggaagacctagaaaaactattagacaaactatttagaaagatctagatattaatgagttgga 21200741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 361
Target Start/End: Original strand, 39235281 - 39235331
Alignment:
Q  311 aaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    |||||||||  ||||||||||||||||||||||| |  |||||||||||||    
T  39235281 aaaaactataggataaactattaggaaagatttagaagttaatgagttgga 39235331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 362
Target Start/End: Complemental strand, 23534695 - 23534658
Alignment:
Q  325 aaactattaggaaagatttatagattaatgagttggac 362  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  23534695 aaactattaggaaagacttagagattaatgagttggac 23534658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 361
Target Start/End: Original strand, 29475792 - 29475879
Alignment:
Q  268 ggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||||  |||| ||||||||||||||||    | |||||||| |||| |||  |||||||| ||||||| || ||||||||||||||||    
T  29475792 ggaggatagttggatcactagaggcagaggaag----acctagaaaagctataaga--aactattaagaaagatctagagattaatgagttgga 29475879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 363
Target Start/End: Complemental strand, 34844721 - 34844660
Alignment:
Q  302 aagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttggacc 363  Q
    |||| ||||||||||||| ||| |||||||||||||| | ||  ||||||||||| ||||||    
T  34844721 aagacctagaaaaactataagagaaactattaggaaaaacttggagattaatgaggtggacc 34844660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 363
Target Start/End: Original strand, 54128509 - 54128574
Alignment:
Q  299 aggaagaactagaaaaactatga-gataaactattaggaaagatttatagattaatgagttggacc 363  Q
    ||||||| ||||||||||||| | || ||||||| |||||||||||| || | |||||||||||||    
T  54128509 aggaagacctagaaaaactattaagagaaactataaggaaagatttagaggtcaatgagttggacc 54128574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 361
Target Start/End: Original strand, 19737141 - 19737177
Alignment:
Q  325 aaactattaggaaagatttatagattaatgagttgga 361  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  19737141 aaactattaggaaatatttagagattaatgagttgga 19737177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 361
Target Start/End: Original strand, 19758044 - 19758080
Alignment:
Q  325 aaactattaggaaagatttatagattaatgagttgga 361  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  19758044 aaactattaggaaatatttagagattaatgagttgga 19758080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 359
Target Start/End: Complemental strand, 41482321 - 41482228
Alignment:
Q  264 aggtggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatga-gataaactattaggaaaga-tttatagattaatgagttg 359  Q
    |||||||||| |||| |||| ||||||||||||||||    | ||||||||||| | | || |||||||||||||||| |||  ||||||||||||||    
T  41482321 aggtggaggacagtcggatcactagaggcagaggaag----acctagaaaaacttttaagagaaactattaggaaagactttggagattaatgagttg 41482228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 267 - 363
Target Start/End: Complemental strand, 35914780 - 35914688
Alignment:
Q  267 tggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttggacc 363  Q
    |||||||||||||||||||||||| |||||||||  |    |||||||||||| ||| |||||||||||||||| ||  ||||||||||||||||||    
T  35914780 tggaggatagtcagatccctagagacagaggaagaca----tagaaaaactataagagaaactattaggaaagacttgaagattaatgagttggacc 35914688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 267 - 362
Target Start/End: Original strand, 32931064 - 32931155
Alignment:
Q  267 tggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttggac 362  Q
    ||||||||||||| ||| ||||||||||||||||    | ||| ||||||||| ||| |||||||||||||||||||  | |||||||||||||||    
T  32931064 tggaggatagtcatatcactagaggcagaggaag----acctaaaaaaactatcagagaaactattaggaaagattttgaaattaatgagttggac 32931155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 267 - 362
Target Start/End: Complemental strand, 35362829 - 35362738
Alignment:
Q  267 tggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttggac 362  Q
    ||||||||||||| ||||||| ||||||||||||    | |||||||||||||  || |||||||||||||||||||  | |||||||||||||||    
T  35362829 tggaggatagtcaaatccctataggcagaggaag----acctagaaaaactatcggagaaactattaggaaagatttggaaattaatgagttggac 35362738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 361
Target Start/End: Complemental strand, 35643785 - 35643695
Alignment:
Q  267 tggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||||||||||  ||||||||||||||||    | ||||||||||||| ||| ||| ||||| ||||||| || ||||||||||||||||    
T  35643785 tggaggatagtcagattactagaggcagaggaag----acctagaaaaactataagagaaattattaagaaagatctagagattaatgagttgga 35643695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 4011214 - 4011276
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| ||||||||||||| ||| ||||||||| ||||||| || ||||||||||||||||    
T  4011214 aggaagacctagaaaaactataagagaaactattaagaaagatctaaagattaatgagttgga 4011276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 28169523 - 28169585
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| ||| ||||||||| ||| |||||||||||||||||||  ||||||||||||||||    
T  28169523 aggaagacctaaaaaaactataagagaaactattaggaaagattttgagattaatgagttgga 28169585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 361
Target Start/End: Complemental strand, 30783221 - 30783131
Alignment:
Q  267 tggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||||||||||| ||||||||||||    ||||| |||| ||||| || ||| ||||||||  ||||||| || ||||||||||||||||    
T  30783221 tggaggatagtcagatcactagaggcagag----gaagatctagtaaaaccataagagaaactatttagaaagatctagagattaatgagttgga 30783131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 358
Target Start/End: Complemental strand, 45512669 - 45512587
Alignment:
Q  272 gatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagtt 358  Q
    |||||||| ||| ||||||||||||||||    | ||||||||||||| ||| |||||||||||||||| ||  |||||||||||||    
T  45512669 gatagtcaaatcactagaggcagaggaag----acctagaaaaactataagagaaactattaggaaagacttggagattaatgagtt 45512587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 359
Target Start/End: Original strand, 13589619 - 13589670
Alignment:
Q  308 tagaaaaactatgagataaactattaggaaagatttatagattaatgagttg 359  Q
    |||||||||||| ||| |||||||||| ||||||||| ||||||||||||||    
T  13589619 tagaaaaactataagagaaactattagaaaagatttaaagattaatgagttg 13589670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 361
Target Start/End: Original strand, 27037769 - 27037828
Alignment:
Q  302 aagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    |||| |||| ||||||||  |||||||||||||||||||| || ||||||||||||||||    
T  27037769 aagacctagtaaaactatacgataaactattaggaaagatataaagattaatgagttgga 27037828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 23023356 - 23023418
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| ||||||||||||| ||| |||||| || ||||||| || ||||||||||||||||    
T  23023356 aggaagacctagaaaaactataagagaaactactaagaaagatctacagattaatgagttgga 23023418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 361
Target Start/End: Original strand, 29520788 - 29520842
Alignment:
Q  307 ctagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||||||| ||| ||||| ||||||| |||||| ||||||||||||||||    
T  29520788 ctagaaaaactataagagaaactgttaggaacgatttagagattaatgagttgga 29520842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 361
Target Start/End: Original strand, 30559836 - 30559886
Alignment:
Q  311 aaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||| ||| ||||||| |||||||||||| ||||||||||||||||    
T  30559836 aaaaactataagagaaactatcaggaaagatttagagattaatgagttgga 30559886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 17491805 - 17491741
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttggacc 363  Q
    ||||||| ||||||||||| | ||| ||||||||| |||||| ||  ||||||||||||||||||    
T  17491805 aggaagacctagaaaaactgtaagagaaactattaagaaagacttggagattaatgagttggacc 17491741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 361
Target Start/End: Original strand, 39388921 - 39388976
Alignment:
Q  307 ctagaaaaactatga-gataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||||||| | || ||||||||||||||||| || ||||||||||||||||    
T  39388921 ctagaaaaactataaagagaaactattaggaaagatctagagattaatgagttgga 39388976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 10080058 - 10079996
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| ||||| ||||||| ||| ||||| ||| ||||||| || ||||||||||||||||    
T  10080058 aggaagacctagagaaactataagaaaaactgttaagaaagatctagagattaatgagttgga 10079996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 359
Target Start/End: Original strand, 16351511 - 16351569
Alignment:
Q  301 gaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttg 359  Q
    ||||| ||||||||||||| ||| ||||||||| ||| ||| || ||||||||||||||    
T  16351511 gaagacctagaaaaactattagagaaactattaagaaggatctagagattaatgagttg 16351569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 16994595 - 16994533
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| |||||||||||||  || ||||||||| ||| |||||| |||||| |||||||||    
T  16994595 aggaagacctagaaaaactatatgagaaactattaagaatgatttagagattattgagttgga 16994533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 363
Target Start/End: Original strand, 29700372 - 29700471
Alignment:
Q  260 gattaggtggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttg 359  Q
    |||||| ||||||||||||| ||| ||||||| ||    ||||||| ||||||||||||  ||| |||||| ||||||||| ||  |||| ||||||| |    
T  29700372 gattagatggaggatagtcatatcactagaggtag----aggaagacctagaaaaactaaaagagaaactaataggaaagacttggagataaatgagtcg 29700467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 361
Target Start/End: Complemental strand, 39967642 - 39967588
Alignment:
Q  307 ctagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||||||| ||| ||||||||| ||||||| ||  |||||||||||||||    
T  39967642 ctagaaaaactataagagaaactattaagaaagatctagcgattaatgagttgga 39967588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 361
Target Start/End: Original strand, 2216391 - 2216480
Alignment:
Q  267 tggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||||||||||| ||||||| ||    ||||||| |||||||||  || ||| ||||||||| | |||||||| |||| |||||||||||    
T  2216391 tggaggatagtcagatcactagaggtag----aggaagacctagaaaaaacataagagaaactattaag-aagatttagagatcaatgagttgga 2216480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 361
Target Start/End: Complemental strand, 38178439 - 38178349
Alignment:
Q  267 tggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||||||| ||| ||||||| ||||||||    | ||||||||||||| ||| |||||||||  |||||  || | ||||||||||||||    
T  38178439 tggaggatagtcaaatcgctagaggtagaggaag----acctagaaaaactataagagaaactattaacaaagacctagacattaatgagttgga 38178349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 45419366 - 45419411
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagattta 344  Q
    ||||||| ||||||||||||| ||| ||||||||||||||| ||||    
T  45419366 aggaagacctagaaaaactataagagaaactattaggaaaggttta 45419411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 361
Target Start/End: Original strand, 5908746 - 5908839
Alignment:
Q  264 aggtggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||||| |||||||| |||||| ||     ||||||| ||||||||||||| ||| |||||||||  ||||||  |  |||||||||||||||    
T  5908746 aggtggaggatggtcagatcactagagaca----taggaagacctagaaaaactataagagaaactattaaaaaagatccaaggattaatgagttgga 5908839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 361
Target Start/End: Complemental strand, 45041440 - 45041404
Alignment:
Q  325 aaactattaggaaagatttatagattaatgagttgga 361  Q
    |||||||||||||||||||| || |||||||||||||    
T  45041440 aaactattaggaaagatttagaggttaatgagttgga 45041404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 302 - 361
Target Start/End: Original strand, 21834688 - 21834747
Alignment:
Q  302 aagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    |||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  21834688 aagatctagaaaaactataagataaactattaggaaatatttatagattaatgagttgga 21834747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 43752098 - 43752033
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttggaccg 364  Q
    ||||||| ||||||||||||| ||| |||||||||||||||||||  | |||||||||||||||||    
T  43752098 aggaagacctagaaaaactatcagagaaactattaggaaagatttggaaattaatgagttggaccg 43752033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 361
Target Start/End: Original strand, 38435055 - 38435145
Alignment:
Q  267 tggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||||||||||| ||||||||||||| ||    | ||||||||||||  ||| ||||||||| ||||||| || ||||||||| ||||||    
T  38435055 tggaggatagtcagatcactagaggcagaggtag----acctagaaaaactacaagagaaactattaagaaagatctagagattaatgtgttgga 38435145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 363
Target Start/End: Original strand, 26670899 - 26670963
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttggacc 363  Q
    ||||||| ||| ||||||||| | | ||||||||| |||||||||| ||||||||||||||||||    
T  26670899 aggaagacctacaaaaactataaaagaaactattaagaaagatttagagattaatgagttggacc 26670963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 361
Target Start/End: Complemental strand, 9556521 - 9556458
Alignment:
Q  298 aaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    |||||||| || |||||||||| ||||||||||||| ||||||| ||  |||||||||||||||    
T  9556521 aaggaagaccttgaaaaactataagataaactattaagaaagatctagtgattaatgagttgga 9556458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 359
Target Start/End: Complemental strand, 26784519 - 26784431
Alignment:
Q  267 tggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttg 359  Q
    |||||| |||||| ||| |||||||||||| |||    | ||||||||||||| ||| ||||||||| ||||||| || ||||||||||||||    
T  26784519 tggagggtagtcaaatcactagaggcagagaaag----acctagaaaaactataagagaaactattaagaaagatatagagattaatgagttg 26784431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 361
Target Start/End: Original strand, 18959014 - 18959104
Alignment:
Q  267 tggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    |||||||||||||||||   ||||||||||||||    | ||||||||||||  ||| ||||||| |||||||| ||  ||||||||||||||||    
T  18959014 tggaggatagtcagatcatcagaggcagaggaag----acctagaaaaactacaagagaaactataaggaaagacttggagattaatgagttgga 18959104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 358
Target Start/End: Original strand, 33287552 - 33287611
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagtt 358  Q
    ||||||| ||||||||||||| ||| ||||||||| ||||||| || | |||||||||||    
T  33287552 aggaagacctagaaaaactataagagaaactattaagaaagatctagaaattaatgagtt 33287611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 12141675 - 12141737
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| |||||||| ||||  || |||||||||||||||| ||| |||||||||| |||||    
T  12141675 aggaagacctagaaaagctataggagaaactattaggaaagacttagagattaatgacttgga 12141737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 19235135 - 19235073
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| ||||||||||||| ||| ||||||||  ||||||| || |||||||||| |||||    
T  19235135 aggaagacctagaaaaactataagagaaactattgagaaagatctagagattaatgatttgga 19235073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 361
Target Start/End: Complemental strand, 37470272 - 37470222
Alignment:
Q  311 aaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||| ||| |||||||||||| |||| || ||||||||||||||||    
T  37470272 aaaaactataagagaaactattaggacagatctagagattaatgagttgga 37470222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 361
Target Start/End: Original strand, 42543374 - 42543428
Alignment:
Q  307 ctagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||||||| ||| ||||||||||||| ||| || |||| |||||||||||    
T  42543374 ctagaaaaactataagagaaactattaggaaggatctagagataaatgagttgga 42543428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 43573280 - 43573219
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| ||||||||||||| ||| |||| | ||||||||||||| || |||||||||||||    
T  43573280 aggaagacctagaaaaactataagaaaaacaactaggaaagattta-aggttaatgagttgga 43573219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 28628084 - 28628022
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| ||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||    
T  28628084 aggaagacctagaaaaactataagagaaactattaggaaagatttagagattaatgagttgga 28628022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 364
Target Start/End: Complemental strand, 38135392 - 38135299
Alignment:
Q  267 tggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttggaccg 364  Q
    |||||||||||||||||  |||||||||| ||||    | ||||||||| ||| ||| |||||||||  ||||||||| |||||||||||||||||||    
T  38135392 tggaggatagtcagatcattagaggcagatgaag----acctagaaaaagtataagagaaactattaaaaaagatttagagattaatgagttggaccg 38135299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 361
Target Start/End: Original strand, 47848777 - 47848866
Alignment:
Q  267 tggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    |||||||||||| |||| ||||||||||    ||||||||||||||||||||| ||| |||||||| ||||||||||   |||||||||| ||||    
T  47848777 tggaggatagtctgatcactagaggcag----aggaagaactagaaaaactataagagaaactatt-ggaaagatttggggattaatgagctgga 47848866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 12966147 - 12966209
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| ||||||||||||| ||| ||||||||| |||| ||||| |||||||||| |||||    
T  12966147 aggaagacctagaaaaactataagagaaactattaagaaatatttagagattaatgatttgga 12966209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 350
Target Start/End: Complemental strand, 30814850 - 30814771
Alignment:
Q  267 tggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagatt 350  Q
    ||||||||||||||||| ||||||||||||    ||||| ||||||| ||||| ||| ||||||||| ||||||| || |||||    
T  30814850 tggaggatagtcagatcactagaggcagag----gaagacctagaaacactataagagaaactattaagaaagatctagagatt 30814771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 45601607 - 45601669
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| ||||||||||||| ||| |||| |||| ||||||| || ||||||||||||||||    
T  45601607 aggaagacctagaaaaactataagagaaaccattaagaaagatctagagattaatgagttgga 45601669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 361
Target Start/End: Original strand, 1569119 - 1569209
Alignment:
Q  267 tggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||||||||||  ||||||||||||| ||      ||||||||||||| |||  |||||||| ||||||| || ||||||||||||||||    
T  1569119 tggaggatagtcagattgctagaggcagaggtagtc----ctagaaaaactataagagtaactattaagaaagatctagagattaatgagttgga 1569209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 361
Target Start/End: Complemental strand, 36239938 - 36239885
Alignment:
Q  308 tagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    |||||||||||| ||| |||||||||||||| ||||| ||||||| ||||||||    
T  36239938 tagaaaaactataagagaaactattaggaaaaatttagagattaacgagttgga 36239885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 361
Target Start/End: Original strand, 37976368 - 37976428
Alignment:
Q  301 gaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||| ||||||||||||| ||  |||||| || |||||||||| ||||||||||||||||    
T  37976368 gaagacctagaaaaactataagtgaaactaatatgaaagatttagagattaatgagttgga 37976428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 9210855 - 9210793
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| |||| |||||||| ||| ||||| |||||||| ||||| || |||||||||||||    
T  9210855 aggaagacctaggaaaactataagagaaacttttaggaaaaatttagaggttaatgagttgga 9210793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 36136895 - 36136957
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| ||||||||||||| ||| |||||||| ||||||||||| |  ||||||| |||||    
T  36136895 aggaagacctagaaaaactataagagaaactatttggaaagatttagatgttaatgaattgga 36136957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 40980079 - 40980017
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| |||| |||||||| ||| |||||||||| ||||||||| || | |||||||||||    
T  40980079 aggaagacctaggaaaactataagagaaactattagaaaagatttagaggtcaatgagttgga 40980017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 364
Target Start/End: Complemental strand, 26742069 - 26741980
Alignment:
Q  273 atagtcagatccctagaggcagaggaaggaagaactagaaaaactatga--gataaactattaggaaagatttatagattaatgagttggaccg 364  Q
    ||||||||||| ||||||||||||||||    |  |||||||||||| |  ||||||||||||||||| ||||  | || ||||||||||||||    
T  26742069 atagtcagatcactagaggcagaggaag----acgtagaaaaactatcaaagataaactattaggaaatatttggaaataaatgagttggaccg 26741980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 28355321 - 28355358
Alignment:
Q  324 taaactattaggaaagatttatagattaatgagttgga 361  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  28355321 taaactattaggaaagatttataggttaatgaggtgga 28355358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 361
Target Start/End: Original strand, 28858185 - 28858238
Alignment:
Q  308 tagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    |||||||||||| ||| ||||||||| ||||||| || |||||||| |||||||    
T  28858185 tagaaaaactataagacaaactattaagaaagatctagagattaataagttgga 28858238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 1531512 - 1531448
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttggacc 363  Q
    ||||||| ||| ||||||||| ||  ||| |||||||||| ||||| || |||||||||||||||    
T  1531512 aggaagacctaaaaaaactataagcaaaattattaggaaaaatttagaggttaatgagttggacc 1531448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 5418180 - 5418216
Alignment:
Q  264 aggtggaggatagtcagatccctagaggcagaggaag 300  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  5418180 aggtggaggatagtcagatcactagaggcaaaggaag 5418216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 361
Target Start/End: Complemental strand, 21517529 - 21517469
Alignment:
Q  301 gaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||| ||||||||||||| ||| |||||||||  ||| ||||| |||||||| |||||||    
T  21517529 gaagacctagaaaaactataagagaaactattaaaaaatatttagagattaataagttgga 21517469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 361
Target Start/End: Complemental strand, 28542069 - 28542033
Alignment:
Q  325 aaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  28542069 aaactattaagaaagatttagagattaatgagttgga 28542033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 361
Target Start/End: Complemental strand, 36101898 - 36101866
Alignment:
Q  329 tattaggaaagatttatagattaatgagttgga 361  Q
    ||||| |||||||||||||||||||||||||||    
T  36101898 tattatgaaagatttatagattaatgagttgga 36101866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 275 - 362
Target Start/End: Original strand, 53540401 - 53540484
Alignment:
Q  275 agtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttggac 362  Q
    ||||||||| ||||||||||||||||    | ||||||||||||| |||||||||||||||||||| ||  |||||||||||||||||    
T  53540401 agtcagatcactagaggcagaggaag----acctagaaaaactataagataaactattaggaaagacttggagattaatgagttggac 53540484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 267 - 362
Target Start/End: Complemental strand, 21945817 - 21945726
Alignment:
Q  267 tggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttggac 362  Q
    ||||||||||||| ||| |||||||| |||||||    | ||||||||||||| | | |||||||||||||||||||  | |||||||||||||||    
T  21945817 tggaggatagtcacatcactagaggctgaggaag----acctagaaaaactatcatagaaactattaggaaagatttggaaattaatgagttggac 21945726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 45204990 - 45204928
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| ||||||||||||| ||| |||||||||||||||||||| || ||||| |||||||    
T  45204990 aggaagacctagaaaaactataagagaaactattaggaaagatttagagtttaataagttgga 45204928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 361
Target Start/End: Complemental strand, 53518466 - 53518412
Alignment:
Q  307 ctagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||||||||||| |||||| ||||||||||||| || |||||||||||||    
T  53518466 ctagaaaaactatgagaaaaactaataggaaagatttagaggttaatgagttgga 53518412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 55809141 - 55809079
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| ||||||||||||| ||| ||||| |||||||||||||| || |||||||||||||    
T  55809141 aggaagacctagaaaaactataagagaaactgttaggaaagatttagaggttaatgagttgga 55809079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 361
Target Start/End: Original strand, 28351693 - 28351752
Alignment:
Q  302 aagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    |||| ||||||||||||| ||| ||||||||| |||||||||| |||||| |||||||||    
T  28351693 aagacctagaaaaactataagagaaactattacgaaagatttagagattattgagttgga 28351752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 17666185 - 17666135
Alignment:
Q  308 tagaaaaactatgagataaactattaggaaagatttatagattaatgagtt 358  Q
    |||||||| ||| ||| |||||||||| |||||||||||||||||||||||    
T  17666185 tagaaaaaatataagagaaactattagaaaagatttatagattaatgagtt 17666135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 31043203 - 31043265
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| | ||| ||||||  ||| |||||||||||||||||||| ||||||||||||||||    
T  31043203 aggaagacccagataaactaaaagagaaactattaggaaagatttagagattaatgagttgga 31043265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 361
Target Start/End: Complemental strand, 31961409 - 31961355
Alignment:
Q  307 ctagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||||||| ||| ||||||||||||||||| || |||| |||||||||||    
T  31961409 ctagaaaaactataagagaaactattaggaaagatctagagataaatgagttgga 31961355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 51421861 - 51421923
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    |||||||  |||||||||||| ||| |||||||||||||||||||| || ||||||| |||||    
T  51421861 aggaagatttagaaaaactataagagaaactattaggaaagatttagaggttaatgaattgga 51421923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 358
Target Start/End: Complemental strand, 7682096 - 7682002
Alignment:
Q  260 gattaggtggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagtt 358  Q
    |||||| |||||| |||||| ||| ||||||||||||||||    | || |||||||||| ||| ||||||| | |||| || ||||||||||||||||    
T  7682096 gattagatggagggtagtcacatcactagaggcagaggaag----acctggaaaaactataagagaaactatcaagaaaaatctatagattaatgagtt 7682002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 361
Target Start/End: Original strand, 21107124 - 21107185
Alignment:
Q  300 ggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    |||||| ||||||||||||| ||| ||||||||||||||| ||||  ||||||| |||||||    
T  21107124 ggaagacctagaaaaactataagagaaactattaggaaagttttagtgattaattagttgga 21107185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 934591 - 934520
Alignment:
Q  285 ctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||||||||||     |||||||||||||| ||| ||||||||| ||||| | || ||||||||||||||||    
T  934591 ctagaggcagaggaag-----actagaaaaactattagagaaactattaagaaagttctagagattaatgagttgga 934520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 359
Target Start/End: Original strand, 20999131 - 20999191
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttg 359  Q
    ||||||| ||||||||||||| | ||||||||||| ||||||| || || |||||||||||    
T  20999131 aggaagacctagaaaaactataatataaactattaagaaagatctagagtttaatgagttg 20999191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 361
Target Start/End: Original strand, 31459151 - 31459187
Alignment:
Q  325 aaactattaggaaagatttatagattaatgagttgga 361  Q
    |||||||||||||||||||| ||||||||||||||||    
T  31459151 aaactattaggaaagatttagagattaatgagttgga 31459187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 358
Target Start/End: Original strand, 35690402 - 35690461
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagtt 358  Q
    ||||||| ||||||||||||| ||| ||||||||| |||| ||||| || ||||||||||    
T  35690402 aggaagacctagaaaaactataagagaaactattacgaaaaatttagaggttaatgagtt 35690461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 361
Target Start/End: Original strand, 10209175 - 10209229
Alignment:
Q  307 ctagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||||||| ||| ||||||||| ||| ||| || ||||||||||||||||    
T  10209175 ctagaaaaactataagagaaactattaagaaggatctagagattaatgagttgga 10209229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 362
Target Start/End: Complemental strand, 13805444 - 13805353
Alignment:
Q  267 tggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttggac 362  Q
    |||||||| |||||||| |||||||||||||||     | ||||||||||||| ||| ||||||| | |||||||||  ||| |||| ||||||||    
T  13805444 tggaggattgtcagatcactagaggcagaggaaa----acctagaaaaactataagagaaactatgaagaaagattttgagagtaataagttggac 13805353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 326 - 360
Target Start/End: Complemental strand, 27049301 - 27049267
Alignment:
Q  326 aactattaggaaagatttatagattaatgagttgg 360  Q
    |||||||| ||||||||||||||||||||||||||    
T  27049301 aactattaagaaagatttatagattaatgagttgg 27049267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 361
Target Start/End: Complemental strand, 31897571 - 31897517
Alignment:
Q  307 ctagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||||||| ||| ||||||||||||| ||| || |||| |||||||||||    
T  31897571 ctagaaaaactataagagaaactattaggaaggatctagagataaatgagttgga 31897517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 361
Target Start/End: Original strand, 46372163 - 46372217
Alignment:
Q  307 ctagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||||||| ||| ||||||||||||| ||| || |||| |||||||||||    
T  46372163 ctagaaaaactataagagaaactattaggaaggatctagagataaatgagttgga 46372217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 47147504 - 47147566
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| |||||||||||||   | ||||||||| ||||||| || ||||||||||||||||    
T  47147504 aggaagacctagaaaaactatagaagaaactattaagaaagatctagagattaatgagttgga 47147566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 325 - 363
Target Start/End: Complemental strand, 52360069 - 52360031
Alignment:
Q  325 aaactattaggaaagatttatagattaatgagttggacc 363  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  52360069 aaactattaggaaagatttggagattaatgagttggacc 52360031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 361
Target Start/End: Complemental strand, 21214728 - 21214675
Alignment:
Q  308 tagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    |||||||||||| ||| ||||||||| ||||| | |||||| ||||||||||||    
T  21214728 tagaaaaactataagagaaactattaagaaaggtctatagagtaatgagttgga 21214675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 360
Target Start/End: Original strand, 26356751 - 26356811
Alignment:
Q  300 ggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgg 360  Q
    |||||| ||||||||||||| ||| ||||| ||| ||| ||| || |||||||||||||||    
T  26356751 ggaagacctagaaaaactataagagaaactgttatgaaggatctagagattaatgagttgg 26356811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 42293417 - 42293357
Alignment:
Q  298 aaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagtt 358  Q
    ||||| |||||| ||||||||| ||| ||||||||| ||||||| || | |||||||||||    
T  42293417 aaggatgaactaaaaaaactataagagaaactattaagaaagatctagaaattaatgagtt 42293357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 361
Target Start/End: Original strand, 55579165 - 55579225
Alignment:
Q  301 gaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||| ||||||||||||| | ||||||||||  |||||||||| || || ||||||||||    
T  55579165 gaagacctagaaaaactataaaataaactattttgaaagatttaaaggttcatgagttgga 55579225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 361
Target Start/End: Original strand, 40416504 - 40416564
Alignment:
Q  301 gaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||| ||||||||||||| ||| ||||||||| ||||||| |||||||||||||||||||    
T  40416504 gaagacctagaaaaactataagacaaactattaagaaagatctatagattaatgagttgga 40416564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 358
Target Start/End: Original strand, 9509449 - 9509508
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagtt 358  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||| ||  |||||||||    
T  9509449 aggaagacctagaaaaactataagataaactattaggaaagatttacagcctaatgagtt 9509508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 358
Target Start/End: Complemental strand, 32404677 - 32404618
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagtt 358  Q
    ||||||| ||| ||||||||| ||| |||||||||||||||||||| |||||||||||||    
T  32404677 aggaagacctacaaaaactataagagaaactattaggaaagatttagagattaatgagtt 32404618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 359
Target Start/End: Complemental strand, 3819007 - 3818947
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttg 359  Q
    ||||||| || |||||||||| ||| ||||||||| |||||||||| ||||||||||||||    
T  3819007 aggaagaccttgaaaaactataagagaaactattaagaaagatttagagattaatgagttg 3818947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 36339954 - 36339892
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttggac 362  Q
    ||||||| ||||||||||||| ||| |||||||||||||||||||  | |||||||||||||||    
T  36339954 aggaagacctagaaaaactatcagagaaactattaggaaagattt-gaaattaatgagttggac 36339892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 30834128 - 30834066
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| |||||||| |||| ||| ||||||||| ||||||| || ||||||||||||||||    
T  30834128 aggaagacctagaaaagctataagagaaactattacgaaagatctagagattaatgagttgga 30834066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 361
Target Start/End: Original strand, 42501247 - 42501301
Alignment:
Q  307 ctagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||||||| ||| ||| ||||| ||||||| |||||||||||||||||||    
T  42501247 ctagaaaaactataagagaaattattaagaaagatctatagattaatgagttgga 42501301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 52561740 - 52561678
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    |||||||  |||||||||||| ||| ||||| |||||||||||||| || |||||||||||||    
T  52561740 aggaagacttagaaaaactataagagaaactgttaggaaagatttagaggttaatgagttgga 52561678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 362
Target Start/End: Complemental strand, 8203283 - 8203222
Alignment:
Q  301 gaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttggac 362  Q
    ||||| ||||||||||||| ||| |||||||||  |||||| || |||||||||||||||||    
T  8203283 gaagacctagaaaaactataagagaaactattaaaaaagatctagagattaatgagttggac 8203222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 300
Target Start/End: Complemental strand, 35828729 - 35828696
Alignment:
Q  267 tggaggatagtcagatccctagaggcagaggaag 300  Q
    ||||||||||||||||||||||||||||||||||    
T  35828729 tggaggatagtcagatccctagaggcagaggaag 35828696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 8628161 - 8628217
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatga 355  Q
    ||||||| ||||||||||||| | | |||||||||||||||||||| || |||||||    
T  8628161 aggaagacctagaaaaactataacagaaactattaggaaagatttagaggttaatga 8628217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 361
Target Start/End: Complemental strand, 19969361 - 19969301
Alignment:
Q  301 gaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||| ||||||||||||| ||| |||||||||  |||||| || ||||||||||||||||    
T  19969361 gaagacctagaaaaactataagagaaactattaacaaagatctagagattaatgagttgga 19969301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 28511973 - 28511888
Alignment:
Q  274 tagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttggacc 363  Q
    |||||||||| |||||||||||| |||    | ||||||||||||| ||| ||| || ||||||||| ||  ||||||||||||||||||    
T  28511973 tagtcagatcactagaggcagagaaag----acctagaaaaactattagagaaattactaggaaagacttggagattaatgagttggacc 28511888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 361
Target Start/End: Original strand, 41560362 - 41560422
Alignment:
Q  301 gaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||| |||||||| |||| ||| |||||||||||| | ||||| ||||||||||||||||    
T  41560362 gaagacctagaaaagctataagagaaactattaggatacatttagagattaatgagttgga 41560422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 358
Target Start/End: Complemental strand, 9599545 - 9599486
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagtt 358  Q
    ||||||| ||||||||||||  ||| |||||||||||||| ||||| || ||||||||||    
T  9599545 aggaagacctagaaaaactacaagagaaactattaggaaatatttagagtttaatgagtt 9599486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 478809 - 478871
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| ||| |||| |||| ||| ||||||||||||||| |||| || |||||||||||||    
T  478809 aggaagacctacaaaatctataagagaaactattaggaaagttttagaggttaatgagttgga 478871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 361
Target Start/End: Complemental strand, 7762580 - 7762526
Alignment:
Q  307 ctagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||||||| ||| |||||||||| ||||||||| |  |||||||||||||    
T  7762580 ctagaaaaactataagagaaactattagaaaagatttagatgttaatgagttgga 7762526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 8343032 - 8342970
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| ||||||||||||| ||| |||| ||||  |||||| || ||||||||||||||||    
T  8343032 aggaagacctagaaaaactataagagaaacaattaataaagatctagagattaatgagttgga 8342970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 361
Target Start/End: Original strand, 29128922 - 29128976
Alignment:
Q  307 ctagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||||||| ||| |||||||||||||||||||| || ||||  |||||||    
T  29128922 ctagaaaaactataagagaaactattaggaaagatttagaggttaacaagttgga 29128976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 29577293 - 29577231
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| ||||||||||||  | ||||||||||| ||||||| || ||||||||||| ||||    
T  29577293 aggaagacctagaaaaactacaacataaactattaagaaagatctagagattaatgagctgga 29577231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 344
Target Start/End: Complemental strand, 34827256 - 34827210
Alignment:
Q  298 aaggaagaactagaaaaactatgagataaactattaggaaagattta 344  Q
    |||||||| ||||||||||||| ||| |||||||||| |||||||||    
T  34827256 aaggaagacctagaaaaactataagagaaactattagaaaagattta 34827210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 326 - 364
Target Start/End: Complemental strand, 43375722 - 43375684
Alignment:
Q  326 aactattaggaaagatttatagattaatgagttggaccg 364  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  43375722 aactattaagaaagatttagagattaatgagttggaccg 43375684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 364
Target Start/End: Complemental strand, 8677008 - 8676951
Alignment:
Q  307 ctagaaaaactatgagataaactattaggaaagatttatagattaatgagttggaccg 364  Q
    |||| ||| |||| ||| |||||||||  ||||||||| |||||||||||||||||||    
T  8677008 ctaggaaatctataagagaaactattaaaaaagatttagagattaatgagttggaccg 8676951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 300
Target Start/End: Original strand, 8796312 - 8796345
Alignment:
Q  267 tggaggatagtcagatccctagaggcagaggaag 300  Q
    ||||||||||||||||| ||||||||||||||||    
T  8796312 tggaggatagtcagatcactagaggcagaggaag 8796345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 360
Target Start/End: Original strand, 26299224 - 26299277
Alignment:
Q  307 ctagaaaaactatgagataaactattaggaaagatttatagattaatgagttgg 360  Q
    |||| |||||||| ||| ||||||||| |||||||||| || ||||||||||||    
T  26299224 ctaggaaaactataagagaaactattatgaaagatttagaggttaatgagttgg 26299277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 1661567 - 1661615
Alignment:
Q  316 ctatgagataaactattaggaaagatttatagattaatgagttggaccg 364  Q
    |||| ||| |||||||||||||||||||| | ||||| |||||||||||    
T  1661567 ctataagagaaactattaggaaagatttagaaattaacgagttggaccg 1661615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 361
Target Start/End: Complemental strand, 4590657 - 4590621
Alignment:
Q  325 aaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  4590657 aaactattaagaaagatttatagattgatgagttgga 4590621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 357
Target Start/End: Complemental strand, 40228155 - 40228099
Alignment:
Q  301 gaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagt 357  Q
    ||||| ||||||||||||| ||  |||||||||||||||||||  || |||||||||    
T  40228155 gaagacctagaaaaactataagtgaaactattaggaaagatttgaaggttaatgagt 40228099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 361
Target Start/End: Complemental strand, 52532741 - 52532705
Alignment:
Q  325 aaactattaggaaagatttatagattaatgagttgga 361  Q
    |||||||||||||||||||| | ||||||||||||||    
T  52532741 aaactattaggaaagatttagaaattaatgagttgga 52532705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 302 - 364
Target Start/End: Complemental strand, 178568 - 178506
Alignment:
Q  302 aagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttggaccg 364  Q
    |||| ||||||||||||| ||| ||||||||| ||||||| || |||||||||||||||||||    
T  178568 aagacctagaaaaactataagagaaactattaagaaagatatagagattaatgagttggaccg 178506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 9593859 - 9593797
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| ||||||||| ||| ||| |||||||||||||||| ||| ||||||||||||||||    
T  9593859 aggaagacctagaaaaattataagagaaactattaggaaagacttagagattaatgagttgga 9593797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 361
Target Start/End: Original strand, 31818664 - 31818724
Alignment:
Q  301 gaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||| ||||||||||||| ||| ||||||||||||||| |||  ||||||||||||||||    
T  31818664 gaagacctagaaaaactataagagaaactattaggaaaggtttggagattaatgagttgga 31818724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 34656 - 34594
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| ||||||||||||| ||| |||| |||| ||||||| || ||||||||||||||||    
T  34656 aggaagacctagaaaaactataagagaaaccattaagaaagatctaaagattaatgagttgga 34594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 361
Target Start/End: Original strand, 38902 - 38956
Alignment:
Q  307 ctagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||||||| ||| ||||||||||||| ||| || |||| |||||||||||    
T  38902 ctagaaaaactataagagaaactattaggaaggatctagagataaatgagttgga 38956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 5095965 - 5096027
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| ||||||||||||  ||| ||||| ||||||||||||||  | |||||||||||||    
T  5095965 aggaagacctagaaaaactagaagagaaactcttaggaaagatttagtggttaatgagttgga 5096027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 361
Target Start/End: Complemental strand, 12134077 - 12133991
Alignment:
Q  270 aggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    |||||||||||||| |||||||||     ||||||| ||| ||||||||| | ||||| ||||||||||| |||| | ||||||||||||||    
T  12134077 aggatagtcagatcactagaggca----taggaagacctacaaaaactataatataaaatattaggaaag-tttagaaattaatgagttgga 12133991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 359
Target Start/End: Complemental strand, 25493999 - 25493941
Alignment:
Q  301 gaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttg 359  Q
    ||||| |||||| |||||| ||| ||||||| ||||||  |||||||||||||||||||    
T  25493999 gaagacctagaagaactataagagaaactatcaggaaaagtttatagattaatgagttg 25493941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 361
Target Start/End: Complemental strand, 31832002 - 31831948
Alignment:
Q  307 ctagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||||||| ||| ||||||||| ||||||| || |||||| |||||||||    
T  31832002 ctagaaaaactatcagagaaactattaagaaagatctagagattactgagttgga 31831948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 358
Target Start/End: Complemental strand, 35199770 - 35199714
Alignment:
Q  302 aagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagtt 358  Q
    ||||| |||||||| ||| | | ||||||||||||||||| || |||||||||||||    
T  35199770 aagaattagaaaaattataaaagaaactattaggaaagatctagagattaatgagtt 35199714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 28013 - 28075
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| ||||||||||||| ||| |||||||||||||||||||| || ||||| |||||||    
T  28013 aggaagacctagaaaaactataagagaaactattaggaaagatttagaggttaataagttgga 28075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 261 - 360
Target Start/End: Original strand, 6889090 - 6889185
Alignment:
Q  261 attaggtggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgg 360  Q
    ||||| ||||||||||||| | | || |||| |||||||||     ||||||||||||| ||| |||||||||||||||||||| |||||||| ||||||    
T  6889090 attagatggaggatagtcaaaccacttgaggaagaggaaggc----ctagaaaaactataagagaaactattaggaaagatttagagattaattagttgg 6889185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 364
Target Start/End: Original strand, 79644 - 79709
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttggaccg 364  Q
    ||||||| ||||||||||||| ||||||||||||||||| |||||  | ||||||||| |||||||    
T  79644 aggaagacctagaaaaactatcagataaactattaggaatgatttggaaattaatgagctggaccg 79709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 351
Target Start/End: Original strand, 6859478 - 6859564
Alignment:
Q  261 attaggtggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagatta 351  Q
    ||||| ||||||||||||| | | ||||||| ||||||||    | ||||||||||||| ||| |||||||||||||||||||| ||||||    
T  6859478 attagatggaggatagtcaaaccactagaggaagaggaag----acctagaaaaactataagagaaactattaggaaagatttacagatta 6859564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 361
Target Start/End: Original strand, 7678581 - 7678671
Alignment:
Q  267 tggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||||||||||| ||||||||||    ||||||| |||| ||||| || ||| ||||||||  ||||||| || ||||||||||||||||    
T  7678581 tggaggatagtcagatcactagaggcag----aggaagatctagtaaaaccataagagaaactatttagaaagatctagagattaatgagttgga 7678671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 359
Target Start/End: Complemental strand, 12577011 - 12576951
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttg 359  Q
    ||||||| ||||||||||||  ||||||||||||| ||||||| || ||||||||||||||    
T  12577011 aggaagacctagaaaaactacaagataaactattaagaaagatctagagattaatgagttg 12576951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 29922415 - 29922478
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttggac 362  Q
    ||||||| ||||||||||||| ||| ||||||||| |||||||||| |||||||  ||||||||    
T  29922415 aggaagatctagaaaaactataagagaaactattaagaaagatttagagattaacaagttggac 29922478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 362
Target Start/End: Original strand, 6788170 - 6788261
Alignment:
Q  267 tggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttggac 362  Q
    |||||||| |||||||| ||||||||||||||||    | ||||||||||||| | |  ||||||||||||||| ||  | |||||||||||||||    
T  6788170 tggaggatggtcagatcactagaggcagaggaag----acctagaaaaactatcaaaggaactattaggaaagacttggaaattaatgagttggac 6788261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 361
Target Start/End: Original strand, 11675672 - 11675722
Alignment:
Q  311 aaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||| ||| |||||||||||| ||||||| ||||||||||||||||    
T  11675672 aaaaactataagagaaactattaggacagatttagagattaatgagttgga 11675722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 355
Target Start/End: Complemental strand, 15489678 - 15489587
Alignment:
Q  260 gattaggtggaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatga 355  Q
    |||||| |||||||||||   ||| ||||||||||||||||    | |||||||||| || ||| ||||||||| |||||| ||||||||||||||    
T  15489678 gattagatggaggatagttgaatcactagaggcagaggaag----acctagaaaaacaataagagaaactattaagaaagacttatagattaatga 15489587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 358
Target Start/End: Original strand, 27998572 - 27998631
Alignment:
Q  299 aggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagtt 358  Q
    ||||||| ||||||||||||| ||| |||||| || ||||||| || |||||||||||||    
T  27998572 aggaagacctagaaaaactataagagaaactactaagaaagatctacagattaatgagtt 27998631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 361
Target Start/End: Original strand, 14725657 - 14725711
Alignment:
Q  307 ctagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||| ||| |||||||||||||  ||||||||| || |||||||||||||    
T  14725657 ctagaaaaattataagataaactattataaaagatttaaaggttaatgagttgga 14725711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 364
Target Start/End: Original strand, 43035086 - 43035177
Alignment:
Q  269 gaggatagtcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttggaccg 364  Q
    |||||||||||  || ||||||||||||||    |||||||||||||| ||  || |||||||||||||| ||||  | ||| |||||||||||||    
T  43035086 gaggatagtcaactcactagaggcagagga----agaactagaaaaaccatctgagaaactattaggaaaaatttggaaatttatgagttggaccg 43035177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 361
Target Start/End: Original strand, 2713076 - 2713137
Alignment:
Q  300 ggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    |||||| ||||||||||||| ||| ||||||||| ||| ||| || |||| |||||||||||    
T  2713076 ggaagacctagaaaaactataagagaaactattaagaaggatctagagatgaatgagttgga 2713137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 360
Target Start/End: Original strand, 32759715 - 32759768
Alignment:
Q  307 ctagaaaaactatgagataaactattaggaaagatttatagattaatgagttgg 360  Q
    ||||||||| ||| | | ||||||||| |||||||||||||| |||||||||||    
T  32759715 ctagaaaaattataaaagaaactattaagaaagatttatagaataatgagttgg 32759768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 363
Target Start/End: Original strand, 42199420 - 42199481
Alignment:
Q  302 aagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttggacc 363  Q
    |||| ||||||||||||| ||| ||||||||  ||||||| || | ||||||||||||||||    
T  42199420 aagacctagaaaaactattagacaaactatttagaaagatctagatattaatgagttggacc 42199481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 361
Target Start/End: Original strand, 9235162 - 9235240
Alignment:
Q  277 tcagatccctagaggcagaggaaggaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||| ||||||||||||||||    | |||||||||||| ||||  |||||||| ||||||| || ||||||||||| ||||    
T  9235162 tcagatcactagaggcagaggaag----acctagaaaaactaagaga--aactattaagaaagatatagagattaatgagctgga 9235240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 361
Target Start/End: Complemental strand, 28186900 - 28186864
Alignment:
Q  325 aaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  28186900 aaactattaagaaagatttagagattaatgagttgga 28186864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 361
Target Start/End: Complemental strand, 33157980 - 33157920
Alignment:
Q  301 gaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagttgga 361  Q
    ||||| |||||||| |||| ||| |||||| ||  ||| ||||||||||||||||||||||    
T  33157980 gaagacctagaaaacctataagagaaactactaaaaaatatttatagattaatgagttgga 33157920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 11930 - 11986
Alignment:
Q  301 gaagaactagaaaaactatgagataaactattaggaaagatttatagattaatgagt 357  Q
    ||||||||||||||||||| ||| ||||||||| ||| ||| || ||||||||||||    
T  11930 gaagaactagaaaaactataagagaaactattaagaaggatctagagattaatgagt 11986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1259 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold1259
Description:

Target: scaffold1259; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 1662 - 1611
Alignment:
Q  307 ctagaaaaactatgagataaactattaggaaagatttatagattaatgagtt 358  Q
    ||||||||||||| ||| |||||||||| ||||||||| || ||||||||||    
T  1662 ctagaaaaactataagagaaactattagaaaagatttaaaggttaatgagtt 1611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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