View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3053_low_4 (Length: 334)
Name: NF3053_low_4
Description: NF3053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3053_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 16 - 306
Target Start/End: Original strand, 55941086 - 55941376
Alignment:
| Q |
16 |
atgaaagcactaaaggggaatgctaataaagtagtagtgcatcctaaattaagtaatgtatattatcaactcttactattaggaaaaaagagaagcagag |
115 |
Q |
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| T |
55941086 |
atgaaagcactaaaggggaatgctaataaagtagtagtgcatcctaaattaagtaatgtatattatcaactcttactattaggaaaaaagagaagcagag |
55941185 |
T |
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| Q |
116 |
gttaagcaaataaataaggactaaagagactttgagaagctttttgagggtgttttacaccttctaatacaaggaatgcgcaatctacaaatgcttgagg |
215 |
Q |
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| T |
55941186 |
gttaagcaaataaataaggactaaagagactttgagaagctttttgagggtgttttacaccttctaatacaaggaatgcgcaatctacaaatgcttgagg |
55941285 |
T |
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| Q |
216 |
acctcataacacatgtacagttttcaatagaaactgttcggaaataccatcacaatttctctcatttgtgaaatcaaaataagcactaagc |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55941286 |
acctcataacacatgtacagttttcaatagaaactgttcggaaataccatcacaatttctctcatttgtgaaatcaaaataagcactaagc |
55941376 |
T |
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