View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3053_low_5 (Length: 313)
Name: NF3053_low_5
Description: NF3053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3053_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 2158414 - 2158712
Alignment:
| Q |
1 |
cagtccaaatcaatggagggatacataggatccacgtcttggaaagtttaataagttggcacaactaaccaatagtttaataataatagttgacactcat |
100 |
Q |
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| T |
2158414 |
cagtccaaatcaatggagggatacataggatccaagtcttggaaagtttaataagtaggcacaactaaccaatagtttaataataatagttgacactcat |
2158513 |
T |
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| Q |
101 |
gctaaagttattaattattatactgttttcctaaa--cttttgattaattgtgtctaataaactataatgatgcaagaatggatcaaagatttgaagatt |
198 |
Q |
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| T |
2158514 |
gctaaagttattaattattatactgttttccaaaaaacttttgattaattgtgtctaataaactataatgatgcaagaatggatcaaagatttgaagatt |
2158613 |
T |
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| Q |
199 |
atgacttacagataggggaatgataaagcctgagaaaaggttccatattgcatagaatgaggaggatagtatggcagcaacatgtggatttggagttat |
297 |
Q |
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| T |
2158614 |
atgacttacagataggggaatgataaagcctgagaaaaggttccatattgcatagaatgaggaggacagtatggcagcaacatgtggatttggagttat |
2158712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 206 - 297
Target Start/End: Original strand, 2146700 - 2146791
Alignment:
| Q |
206 |
acagataggggaatgataaagcctgagaaaaggttccatattgcatagaatgaggaggatagtatggcagcaacatgtggatttggagttat |
297 |
Q |
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||||||| |||||| || ||||||||||||||| |||||||||||||||||||| |||| |||| ||||||||||||||||||||||||| |
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| T |
2146700 |
acagataagggaataatgaagcctgagaaaaggcaccatattgcatagaatgaggtagataatatgccagcaacatgtggatttggagttat |
2146791 |
T |
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