View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_high_16 (Length: 449)
Name: NF3055_high_16
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 35438064 - 35438504
Alignment:
| Q |
1 |
tctttatcacaatgtactccctcgtctcatatataagtaaagttttgaagaaaaaatattaatcttacttatatttaagacacagaaagagtacaaataa |
100 |
Q |
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| T |
35438064 |
tctttatcacaatgtactccctcgtctcatatagaagtaaagttttgaagaaaaaatattaatcttacttatatttaagacacagaaagagtacaaataa |
35438163 |
T |
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| Q |
101 |
actcaatatggttcatcattcattgttacgtataaacgaaggaaggatacataaccctataaagttaaatgtccaatttgatactgttacttttcttttt |
200 |
Q |
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| T |
35438164 |
actaaatatggttcatcattcattgttacgtataaacgaaggaaggatacataaccctataaagttaaatgtccaatttgatactgttacttttcttttt |
35438263 |
T |
|
| Q |
201 |
agaaatagcttggtactattattatttattttatggagtttgatactatttattagtagtacgatctaaccgatagtaatataatacgatagtaatgtac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
35438264 |
agaaatagcttggtactattattatttattttatggagtttgatactatttattagtagtacgatcgaggcgatagtaatataatacgatagtaatgtac |
35438363 |
T |
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| Q |
301 |
aaactacaataactttctttttggaggtacaaattacaattacttattttcgaagtatatatattaatttaacctatatacaagtgctatttaacagagt |
400 |
Q |
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| T |
35438364 |
aaactacaataactttctttttggaggtacaaattacaattacttattttcgaagtatatatattaatttaccctatatacaagtgctatttaacagagt |
35438463 |
T |
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| Q |
401 |
gttaacttatttatcggagagcacttgattagatgatgatg |
441 |
Q |
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| T |
35438464 |
gttaacttatttatcggagagcacttgattagatggtgatg |
35438504 |
T |
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