View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3055_high_27 (Length: 367)

Name: NF3055_high_27
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3055_high_27
NF3055_high_27
[»] chr3 (9 HSPs)
chr3 (1-208)||(48531600-48531808)
chr3 (1-165)||(48528882-48529046)
chr3 (250-334)||(8431406-8431490)
chr3 (250-327)||(43073034-43073111)
chr3 (250-327)||(31525430-31525507)
chr3 (256-327)||(10454351-10454422)
chr3 (250-327)||(28934724-28934801)
chr3 (266-327)||(44656229-44656290)
chr3 (274-322)||(47820974-47821022)
[»] chr7 (10 HSPs)
chr7 (250-327)||(30655586-30655663)
chr7 (256-327)||(46691839-46691910)
chr7 (250-333)||(1039051-1039134)
chr7 (250-327)||(22197739-22197816)
chr7 (250-327)||(22240005-22240082)
chr7 (250-327)||(42598053-42598130)
chr7 (267-327)||(36615808-36615868)
chr7 (251-333)||(31424761-31424843)
chr7 (256-316)||(32679023-32679083)
chr7 (278-327)||(33320768-33320817)
[»] chr4 (10 HSPs)
chr4 (163-250)||(5341706-5341793)
chr4 (256-327)||(15186975-15187046)
chr4 (266-327)||(16572137-16572198)
chr4 (190-250)||(25222218-25222278)
chr4 (256-327)||(25641263-25641334)
chr4 (251-327)||(47571560-47571636)
chr4 (256-327)||(16662301-16662372)
chr4 (250-323)||(32183351-32183425)
chr4 (250-300)||(45511390-45511440)
chr4 (256-320)||(55133102-55133163)
[»] chr8 (10 HSPs)
chr8 (250-327)||(40930818-40930895)
chr8 (250-327)||(13959207-13959284)
chr8 (257-322)||(22839326-22839391)
chr8 (256-327)||(25829259-25829329)
chr8 (250-299)||(7845135-7845184)
chr8 (250-327)||(38086402-38086479)
chr8 (251-327)||(44362918-44362994)
chr8 (163-224)||(38542725-38542786)
chr8 (250-314)||(584123-584187)
chr8 (250-308)||(30836116-30836174)
[»] chr2 (7 HSPs)
chr2 (266-327)||(41419687-41419748)
chr2 (263-327)||(38908736-38908800)
chr2 (256-327)||(14732334-14732405)
chr2 (275-326)||(41378216-41378267)
chr2 (250-314)||(22649053-22649117)
chr2 (274-327)||(43356750-43356803)
chr2 (322-354)||(32706439-32706471)
[»] chr1 (9 HSPs)
chr1 (250-327)||(19472867-19472944)
chr1 (251-327)||(12173021-12173097)
chr1 (256-327)||(26990668-26990739)
chr1 (250-327)||(38548744-38548821)
chr1 (250-308)||(28447805-28447863)
chr1 (266-327)||(31833958-31834019)
chr1 (275-327)||(46757373-46757425)
chr1 (250-327)||(8462958-8463034)
chr1 (274-327)||(42442019-42442072)
[»] chr6 (6 HSPs)
chr6 (250-314)||(33112703-33112767)
chr6 (259-323)||(6575796-6575860)
chr6 (249-317)||(11546844-11546912)
chr6 (265-308)||(12754422-12754465)
chr6 (256-308)||(10246996-10247049)
chr6 (250-327)||(34761230-34761306)
[»] chr5 (8 HSPs)
chr5 (250-320)||(42241577-42241647)
chr5 (274-327)||(23172985-23173038)
chr5 (250-314)||(9931785-9931848)
chr5 (250-308)||(9597742-9597800)
chr5 (268-317)||(22887288-22887337)
chr5 (322-357)||(3000932-3000967)
chr5 (250-327)||(10431127-10431204)
chr5 (251-327)||(3677779-3677854)
[»] scaffold0209 (1 HSPs)
scaffold0209 (250-314)||(12883-12947)
[»] scaffold0343 (1 HSPs)
scaffold0343 (252-308)||(7956-8012)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 48531808 - 48531600
Alignment:
Q  1 gtaattgtatatgttgggtgtttagttgtacttaaaaagcatgttggtgtgccagattcttggtaacatatgatttgtatcatctaagactttgagcaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||    
T  48531808 gtaattgtatatgttgggtgtttagttgtacttaaaaagcatgttggtgtgccatattcttggtaacaaatgatttgtatcatataagactttgagcaga 48531709  T
Q  101 caaacctgttcacctatcacgtcttgtttgcaagagc-gttgtatttatgagatatgagaagctaagagaaaacaaccttgaatgagattgagaggaagt 199  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48531708 caaacctgttcacctatcacgtcttgtttgcaagagcatttgtatttatgagatatgagaagctaagagaaaacaaccttgaatgagattgagaggaagt 48531609  T
Q  200 ggtgttggt 208  Q
    |||||||||    
T  48531608 ggtgttggt 48531600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 48529046 - 48528882
Alignment:
Q  1 gtaattgtatatgttgggtgtttagttgtacttaaaaagcatgttggtgtgccagattcttggtaacatatgatttgtatcatctaagactttgagcaga 100  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||    
T  48529046 gtaattgtatatgtttggtgtttagttgtatttaaaaagcatgttggtgtgccatattctaggtaacaaatgatttgtatcatctaagactttgagcaga 48528947  T
Q  101 caaacctgttcacctatcacgtcttgtttgcaagagcgttgtatttatgagatatgagaagctaa 165  Q
    || | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  48528946 cagaactgttcacctatcacgtcttgtttgcaagagcattgtatttatgagatatgagaagctaa 48528882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 250 - 334
Target Start/End: Original strand, 8431406 - 8431490
Alignment:
Q  250 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacac 334  Q
    ||||| ||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8431406 tttttttttttgaaacggcaaaatattattgatcaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacac 8431490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 250 - 327
Target Start/End: Original strand, 43073034 - 43073111
Alignment:
Q  250 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    ||||| |||||||| |||||||| |||||||||||| |||||||||||||||||||||| ||||| || |||||||||    
T  43073034 tttttttttttgaatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtggaaaaaa 43073111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 31525507 - 31525430
Alignment:
Q  250 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    ||||| |||||||| |||||||| |||||||||||| ||||| |||||||| ||||||| ||||| || |||||||||    
T  31525507 tttttttttttgaatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaataagcttgggtggaaaaaa 31525430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 327
Target Start/End: Complemental strand, 10454422 - 10454351
Alignment:
Q  256 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    ||||||||| ||||||| |||||||||||| |||||||||||||  ||||||| |||||||| ||| |||||    
T  10454422 tttttgaaatggcaaaatattattaaccaacaagcccgtgcaaggagcactaataagctcgggtgggaaaaa 10454351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 327
Target Start/End: Original strand, 28934724 - 28934801
Alignment:
Q  250 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    ||||| ||||||||   |||||| |||||||||||| |||||||||||||| ||||||| |||||||| |||| ||||    
T  28934724 tttttttttttgaattagcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggagaaaa 28934801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 44656229 - 44656290
Alignment:
Q  266 ggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    ||||||| |||||||||||| ||||||||||||||||||| || |||||||| |||| ||||    
T  44656229 ggcaaaatattattaaccaacaagcccgtgcaagatgcacaaataagctcgggtggagaaaa 44656290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 47821022 - 47820974
Alignment:
Q  274 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga 322  Q
    |||||||||||| |||||||||||||| ||||||| |||||||| ||||    
T  47821022 attattaaccaacaagcccgtgcaagacgcactaataagctcgggtgga 47820974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 250 - 327
Target Start/End: Original strand, 30655586 - 30655663
Alignment:
Q  250 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    ||||| ||||||||||||||||| |||||||||||| |||||||||||||| ||||||| |||||||| |||||||||    
T  30655586 tttttttttttgaaacggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggaaaaaa 30655663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 256 - 327
Target Start/End: Original strand, 46691839 - 46691910
Alignment:
Q  256 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    |||||||| |||||||| |||||||||||| |||||||||||||| |||||||||||||||| |||| ||||    
T  46691839 tttttgaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaacaagctcgggtggagaaaa 46691910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 250 - 333
Target Start/End: Original strand, 1039051 - 1039134
Alignment:
Q  250 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca 333  Q
    ||||| ||||| ||||||||||| |||||||||| | |||||||||||||| ||||||| |||||||| |||| |||| |||||    
T  1039051 tttttttttttcaaacggcaaaatattattaaccgacaagcccgtgcaagaagcactaataagctcgggtggataaaaaaaaca 1039134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 22197816 - 22197739
Alignment:
Q  250 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    ||||| |||||||||| | |||| |||||||||||| ||| ||||||||| |||||||| |||||||| |||||||||    
T  22197816 tttttttttttgaaactgtaaaatattattaaccaacaagtccgtgcaaggtgcactaaaaagctcgggtggaaaaaa 22197739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 250 - 327
Target Start/End: Original strand, 22240005 - 22240082
Alignment:
Q  250 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    ||||| |||||||||| | |||| |||||||||||| ||| ||||||||| |||||||| |||||||| |||||||||    
T  22240005 tttttttttttgaaactgtaaaatattattaaccaacaagtccgtgcaaggtgcactaaaaagctcgggtggaaaaaa 22240082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 42598130 - 42598053
Alignment:
Q  250 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    ||||| ||||| ||||||||||| |||||||||||| || ||||||||||| ||||||| ||||| || |||| ||||    
T  42598130 tttttttttttaaaacggcaaaatattattaaccaacaaacccgtgcaagaagcactaataagcttgggtggagaaaa 42598053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 267 - 327
Target Start/End: Original strand, 36615808 - 36615868
Alignment:
Q  267 gcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    |||||| ||||||| |||| |||||||||||||| ||||||| |||||||| |||||||||    
T  36615808 gcaaaatattattacccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaa 36615868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 333
Target Start/End: Original strand, 31424761 - 31424843
Alignment:
Q  251 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca 333  Q
    |||| |||||||| |||||||| |||||||||||| || |||||||||||  |||||| ||||| || |||| |||| |||||    
T  31424761 ttttttttttgaagcggcaaaatattattaaccaacaaacccgtgcaagaaacactaataagcttgggtggagaaaaaaaaca 31424843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 316
Target Start/End: Complemental strand, 32679083 - 32679023
Alignment:
Q  256 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcg 316  Q
    ||||| ||||||| |||  ||||||||||| |||||||||||||| ||||||| |||||||    
T  32679083 ttttttaaacggctaaattttattaaccaacaagcccgtgcaagacgcactaataagctcg 32679023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 327
Target Start/End: Complemental strand, 33320817 - 33320768
Alignment:
Q  278 ttaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    |||||||| |||||||||||||| ||||||| |||||||| ||| |||||    
T  33320817 ttaaccaacaagcccgtgcaagaagcactaataagctcgggtgggaaaaa 33320768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 5341793 - 5341706
Alignment:
Q  163 taagagaaaacaaccttgaatgagattgagaggaagtggtgttggtgatgtgagagtgagtgtaagggttgatatatttataggagct 250  Q
    ||||||||||| |||||||| |||| |||||||||||| |||||||||||||||||||||| | ||||||  | ||||||||||||||    
T  5341793 taagagaaaacgaccttgaaagagaatgagaggaagtgatgttggtgatgtgagagtgagtctgagggtttgtttatttataggagct 5341706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 256 - 327
Target Start/End: Original strand, 15186975 - 15187046
Alignment:
Q  256 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    |||||||| |||||||| |||||||||||| |||||||||||||||||||||| ||||| || |||| ||||    
T  15186975 tttttgaatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtggataaaa 15187046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 16572198 - 16572137
Alignment:
Q  266 ggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    ||||||| |||||||||||| |||||||||| ||||||||||| |||||||| |||||||||    
T  16572198 ggcaaaatattattaaccaacaagcccgtgcgagatgcactaataagctcgggtggaaaaaa 16572137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 25222278 - 25222218
Alignment:
Q  190 gagaggaagtggtgttggtgatgtgagagtgagtgtaagggttgatatatttataggagct 250  Q
    ||||| ||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||    
T  25222278 gagagaaagtgatgttggtgatgtgagagtgagtataaaggtttatttatttataggagct 25222218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 327
Target Start/End: Original strand, 25641263 - 25641334
Alignment:
Q  256 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    |||||||| ||||||||  ||||||||||| |||||||||||||| ||||||| ||||| || |||| ||||    
T  25641263 tttttgaatcggcaaaatgttattaaccaacaagcccgtgcaagaagcactaaaaagcttgggtggagaaaa 25641334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 47571560 - 47571636
Alignment:
Q  251 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    |||| |||||||| |||||||| |||||||||||| || |||||| |||  ||||||| |||||||| || ||||||    
T  47571560 ttttttttttgaatcggcaaaatattattaaccaacaaacccgtggaaggagcactaataagctcgggtgaaaaaaa 47571636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 327
Target Start/End: Original strand, 16662301 - 16662372
Alignment:
Q  256 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    |||||||| | |||||| |||||||||||| |||||||||| ||| ||||||| |||||  | |||||||||    
T  16662301 tttttgaatcagcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctaaggtggaaaaaa 16662372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 323
Target Start/End: Complemental strand, 32183425 - 32183351
Alignment:
Q  250 tttttatttttgaaacggcaaaaaattattaaccaag-aagcccgtgcaagatgcactaacaagctcggatggaa 323  Q
    ||||| ||||| || |||||||| ||||||||||||  |||||||||||||  ||||||| |||||||| |||||    
T  32183425 tttttttttttaaatcggcaaaatattattaaccaaacaagcccgtgcaaggcgcactaataagctcgggtggaa 32183351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 300
Target Start/End: Original strand, 45511390 - 45511440
Alignment:
Q  250 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaaga 300  Q
    ||||| |||||||| | |||||| |||||||||||| ||||||||||||||    
T  45511390 tttttttttttgaatcagcaaaatattattaaccaacaagcccgtgcaaga 45511440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 55133102 - 55133163
Alignment:
Q  256 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg 320  Q
    ||||||||||| ||||| ||||||||||   |||||||||||||| ||||||| || ||||||||    
T  55133102 tttttgaaacgacaaaatattattaacc---aagcccgtgcaagaagcactaataaactcggatg 55133163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 250 - 327
Target Start/End: Original strand, 40930818 - 40930895
Alignment:
Q  250 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    ||||| ||||||||| ||||||| |||||||||||| |||||||||||||| ||||||| |||||||| |||||||||    
T  40930818 tttttttttttgaaatggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaa 40930895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 250 - 327
Target Start/End: Original strand, 13959207 - 13959284
Alignment:
Q  250 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    ||||| ||||||||||||||||| ||||||| |||| |||||||||||||| ||| ||| |||||||| |||||||||    
T  13959207 tttttttttttgaaacggcaaaatattattagccaacaagcccgtgcaagaagcaataataagctcgggtggaaaaaa 13959284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 257 - 322
Target Start/End: Complemental strand, 22839391 - 22839326
Alignment:
Q  257 ttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga 322  Q
    ||||||| |||||||| |||||||||||| |||||||||||||| ||||||| ||| |||||||||    
T  22839391 ttttgaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagttcggatgga 22839326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 327
Target Start/End: Original strand, 25829259 - 25829329
Alignment:
Q  256 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    |||||||| ||||||| | ||||||||||| |||||||||||||| ||||||| |||||||| |||||||||    
T  25829259 tttttgaatcggcaaata-ttattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaa 25829329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 299
Target Start/End: Complemental strand, 7845184 - 7845135
Alignment:
Q  250 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaag 299  Q
    ||||| ||||||||||||||||| |||||||||||| |||||||||||||    
T  7845184 tttttttttttgaaacggcaaaatattattaaccaacaagcccgtgcaag 7845135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 327
Target Start/End: Original strand, 38086402 - 38086479
Alignment:
Q  250 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    ||||| |||| ||| | |||||| |||||||||||| |||||||||||||| ||||||| |||||||| |||| ||||    
T  38086402 ttttttttttagaatcagcaaaatattattaaccaataagcccgtgcaagacgcactaataagctcgggtggagaaaa 38086479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 44362918 - 44362994
Alignment:
Q  251 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    |||| |||||||||||| |||  |||||||||||| || || |||||||| ||||||| ||| ||||||||||||||    
T  44362918 ttttttttttgaaacggaaaattattattaaccaacaatcctgtgcaagaagcactaataagttcggatggaaaaaa 44362994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 38542725 - 38542786
Alignment:
Q  163 taagagaaaacaaccttgaatgagattgagaggaagtggtgttggtgatgtgagagtgagtg 224  Q
    |||||||||||||| ||||| || | ||||||||| || |||||||||||||||| ||||||    
T  38542725 taagagaaaacaactttgaaagaaagtgagaggaaatgatgttggtgatgtgagaatgagtg 38542786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 584123 - 584187
Alignment:
Q  250 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagct 314  Q
    ||||| || |||||||||||||| ||||||| |||| |||||||| ||||| ||||||| |||||    
T  584123 ttttttttgttgaaacggcaaaatattattagccaacaagcccgtacaagaagcactaataagct 584187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 308
Target Start/End: Original strand, 30836116 - 30836174
Alignment:
Q  250 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaa 308  Q
    ||||| |||||||| |||||||| |||||||||||| |||| ||||| ||| |||||||    
T  30836116 tttttttttttgaatcggcaaaatattattaaccaacaagctcgtgcgagaagcactaa 30836174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 41419748 - 41419687
Alignment:
Q  266 ggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    ||||||| |||||||||||| |||||||||||||||||||||| |||||||| |||||||||    
T  41419748 ggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagctcgggtggaaaaaa 41419687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 327
Target Start/End: Complemental strand, 38908800 - 38908736
Alignment:
Q  263 aacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    |||||||||| |||||||||||| ||| |||||||||||||||||| |||||||| || ||||||    
T  38908800 aacggcaaaatattattaaccaataaggccgtgcaagatgcactaataagctcgggtgaaaaaaa 38908736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 327
Target Start/End: Original strand, 14732334 - 14732405
Alignment:
Q  256 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    ||||||||| ||||||| |||||||||||| |||||||||| || |||||||| |||||||| ||| |||||    
T  14732334 tttttgaaaaggcaaaatattattaaccaacaagcccgtgcgaggtgcactaataagctcgggtgggaaaaa 14732405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 326
Target Start/End: Original strand, 41378216 - 41378267
Alignment:
Q  275 ttattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaa 326  Q
    ||||||||||| ||||||||| |||||||||||| |||||||| ||||||||    
T  41378216 ttattaaccaacaagcccgtgaaagatgcactaataagctcgggtggaaaaa 41378267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 22649053 - 22649117
Alignment:
Q  250 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagct 314  Q
    ||||| |||||||| ||||||||  ||||||||||| |||||||||||||| | ||||| |||||    
T  22649053 tttttttttttgaagcggcaaaattttattaaccaacaagcccgtgcaagaagtactaataagct 22649117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 43356803 - 43356750
Alignment:
Q  274 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    |||||||||||| ||| |||||||||||||||||| ||| |||| || ||||||    
T  43356803 attattaaccaataagtccgtgcaagatgcactaataagttcgggtgaaaaaaa 43356750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 354
Target Start/End: Complemental strand, 32706471 - 32706439
Alignment:
Q  322 aaaaaataaacactacaacactcaactcaccac 354  Q
    ||||||||||||||||||||| |||||||||||    
T  32706471 aaaaaataaacactacaacacgcaactcaccac 32706439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 19472944 - 19472867
Alignment:
Q  250 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    ||||| |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| |||||||| |||| ||||    
T  19472944 tttttttttttgaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggagaaaa 19472867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 12173097 - 12173021
Alignment:
Q  251 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    |||| |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| ||||| || |||||||||    
T  12173097 ttttttttttgaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagcttgggtggaaaaaa 12173021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 256 - 327
Target Start/End: Complemental strand, 26990739 - 26990668
Alignment:
Q  256 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| ||||| || |||||||||    
T  26990739 tttttgaatcggcaaaatattattaaccaataagcccgtgcaagaagcactaataagcttgggtggaaaaaa 26990668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 38548821 - 38548744
Alignment:
Q  250 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    ||||| |||||||| |||||||| |||||||||||| || ||||||||||| ||||||| |||||||| ||| |||||    
T  38548821 tttttttttttgaatcggcaaaatattattaaccaacaaacccgtgcaagacgcactaataagctcgggtgggaaaaa 38548744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 250 - 308
Target Start/End: Complemental strand, 28447863 - 28447805
Alignment:
Q  250 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaa 308  Q
    ||||| |||||||| |||||||| |||||||||||| |||||||||||||| |||||||    
T  28447863 tttttttttttgaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaa 28447805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 31834019 - 31833958
Alignment:
Q  266 ggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    ||||||| |||||||||||| ||  ||||||||||||||||||||||||||| || ||||||    
T  31834019 ggcaaaatattattaaccaacaaatccgtgcaagatgcactaacaagctcgggtgaaaaaaa 31833958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 275 - 327
Target Start/End: Complemental strand, 46757425 - 46757373
Alignment:
Q  275 ttattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    ||||||||||| |||||||||||||||||||||| |||||| | |||||||||    
T  46757425 ttattaaccaacaagcccgtgcaagatgcactaataagctcaggtggaaaaaa 46757373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 327
Target Start/End: Original strand, 8462958 - 8463034
Alignment:
Q  250 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    ||||| ||||||||| || |||| |||||||||||| |||| ||||||||| |||||||  ||||||| |||| ||||    
T  8462958 tttttttttttgaaatgg-aaaatattattaaccaacaagctcgtgcaagaagcactaattagctcgggtggagaaaa 8463034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 42442019 - 42442072
Alignment:
Q  274 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    |||||||||||| ||| |||||||||| ||||||| |||||||| || ||||||    
T  42442019 attattaaccaacaagtccgtgcaagaagcactaataagctcgggtgaaaaaaa 42442072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 33112703 - 33112767
Alignment:
Q  250 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagct 314  Q
    ||||| |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| |||||    
T  33112703 tttttttttttgaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaaaaagct 33112767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 323
Target Start/End: Complemental strand, 6575860 - 6575796
Alignment:
Q  259 ttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaa 323  Q
    ||||| |||||||| |||||||| ||| |||||||||||||| ||||||| ||| |||| |||||    
T  6575860 ttgaatcggcaaaatattattaatcaacaagcccgtgcaagaagcactaataagttcgggtggaa 6575796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 317
Target Start/End: Complemental strand, 11546912 - 11546844
Alignment:
Q  249 ctttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcgg 317  Q
    |||||| ||||| ||||||||||| |||||||||  | |||||||||||||  ||||||| ||||||||    
T  11546912 cttttttttttttaaacggcaaaatattattaactgacaagcccgtgcaagtagcactaataagctcgg 11546844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 308
Target Start/End: Original strand, 12754422 - 12754465
Alignment:
Q  265 cggcaaaaaattattaaccaagaagcccgtgcaagatgcactaa 308  Q
    ||||||||||||||||||||| || ||||||||||| |||||||    
T  12754422 cggcaaaaaattattaaccaacaaacccgtgcaagacgcactaa 12754465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 308
Target Start/End: Complemental strand, 10247049 - 10246996
Alignment:
Q  256 tttttgaaacggcaaaaa-attattaaccaagaagcccgtgcaagatgcactaa 308  Q
    ||||| || ||||||||| |||||||||||| |||||||||||||| |||||||    
T  10247049 ttttttaatcggcaaaaatattattaaccaacaagcccgtgcaagaagcactaa 10246996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 34761306 - 34761230
Alignment:
Q  250 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    ||||| |||||||||||||||| | ||||||| | | |||||||||||||  ||||||| |||||||| ||| |||||    
T  34761306 tttttttttttgaaacggcaaata-ttattaaacgacaagcccgtgcaagtagcactaataagctcgggtgggaaaaa 34761230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 250 - 320
Target Start/End: Original strand, 42241577 - 42241647
Alignment:
Q  250 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg 320  Q
    ||||| ||||| || |||||||| |||||||||||| ||| ||| |||||||||||||| |||||||||||    
T  42241577 ttttttttttttaatcggcaaaatattattaaccaataagtccgggcaagatgcactaataagctcggatg 42241647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 23172985 - 23173038
Alignment:
Q  274 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    |||||||||||| |||||||||||||| ||||||| |||||||| |||||||||    
T  23172985 attattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaa 23173038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 9931785 - 9931848
Alignment:
Q  250 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagct 314  Q
    ||||| |||||||||||| ||| | ||||||||||| |||||||||||||| |||||||||||||    
T  9931785 tttttttttttgaaacggtaaata-ttattaaccaacaagcccgtgcaagaagcactaacaagct 9931848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 308
Target Start/End: Original strand, 9597742 - 9597800
Alignment:
Q  250 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaa 308  Q
    ||||| |||||||| |||||||| |||||||||||| ||||| |||||||| |||||||    
T  9597742 tttttttttttgaatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaa 9597800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 317
Target Start/End: Complemental strand, 22887337 - 22887288
Alignment:
Q  268 caaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcgg 317  Q
    ||||| |||||||||||| |||||||||| ||||||||||| ||||||||    
T  22887337 caaaatattattaaccaacaagcccgtgcgagatgcactaataagctcgg 22887288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 322 - 357
Target Start/End: Complemental strand, 3000967 - 3000932
Alignment:
Q  322 aaaaaataaacactacaacactcaactcaccaccca 357  Q
    ||||||||||||||||||||| ||||||||||||||    
T  3000967 aaaaaataaacactacaacacgcaactcaccaccca 3000932  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 10431204 - 10431127
Alignment:
Q  250 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    ||||| |||||||||||| |||| |||||||| ||| || ||||||||||| ||| ||| ||| |||| |||| ||||    
T  10431204 tttttttttttgaaacggaaaaatattattaatcaacaaacccgtgcaagaagcattaataagttcgggtggagaaaa 10431127  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 3677779 - 3677854
Alignment:
Q  251 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 327  Q
    |||| |||||||| | |||| | ||||||| |||| |||||| ||| ||||||||||| |||||||| |||||||||    
T  3677779 ttttttttttgaatcagcaatatattatta-ccaacaagcccatgcgagatgcactaataagctcgggtggaaaaaa 3677854  T

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Target: scaffold0209 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 12883 - 12947
Alignment:
Q  250 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagct 314  Q
    ||||| || |||||||||||||| ||||||| |||| |||||||| ||||| ||||||| |||||    
T  12883 ttttttttgttgaaacggcaaaatattattagccaacaagcccgtacaagaagcactaataagct 12947  T

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Target: scaffold0343 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 308
Target Start/End: Complemental strand, 8012 - 7956
Alignment:
Q  252 tttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaa 308  Q
    ||||||||| || |||||||| |||||||||||| |||||  ||||| |||||||||    
T  8012 tttatttttaaatcggcaaaatattattaaccaacaagcctatgcaaaatgcactaa 7956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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