View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3055_high_3 (Length: 830)

Name: NF3055_high_3
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3055_high_3
NF3055_high_3
[»] chr4 (21 HSPs)
chr4 (532-811)||(39292503-39292786)
chr4 (1-119)||(39292087-39292209)
chr4 (559-632)||(39235421-39235494)
chr4 (571-634)||(39047759-39047822)
chr4 (559-632)||(39053763-39053836)
chr4 (223-284)||(36203229-36203290)
chr4 (362-406)||(37175798-37175842)
chr4 (362-406)||(39292309-39292353)
chr4 (223-274)||(20096287-20096338)
chr4 (224-274)||(13121538-13121588)
chr4 (221-279)||(13276120-13276178)
chr4 (235-273)||(18541506-18541544)
chr4 (224-274)||(18635524-18635574)
chr4 (223-269)||(22164291-22164337)
chr4 (223-269)||(29737666-29737712)
chr4 (224-266)||(33024150-33024192)
chr4 (223-269)||(43722758-43722804)
chr4 (221-278)||(8494978-8495035)
chr4 (221-286)||(11286786-11286851)
chr4 (229-274)||(38374956-38375001)
chr4 (221-278)||(38812862-38812919)
[»] chr7 (15 HSPs)
chr7 (559-632)||(7562764-7562837)
chr7 (223-286)||(964746-964809)
chr7 (228-279)||(1285081-1285132)
chr7 (221-286)||(3584195-3584260)
chr7 (220-269)||(22267571-22267620)
chr7 (363-408)||(24934749-24934794)
chr7 (227-275)||(3948051-3948099)
chr7 (222-274)||(35222916-35222968)
chr7 (223-279)||(42829246-42829302)
chr7 (221-264)||(20762831-20762874)
chr7 (223-274)||(30857241-30857292)
chr7 (223-285)||(1399155-1399217)
chr7 (243-277)||(28479870-28479904)
chr7 (224-285)||(5352323-5352384)
chr7 (243-280)||(37307885-37307922)
[»] chr1 (21 HSPs)
chr1 (222-269)||(22388197-22388244)
chr1 (222-269)||(41573291-41573338)
chr1 (222-281)||(43840335-43840394)
chr1 (223-273)||(41998344-41998394)
chr1 (224-277)||(2884462-2884515)
chr1 (221-273)||(18091194-18091247)
chr1 (224-285)||(27853349-27853410)
chr1 (225-274)||(44220982-44221031)
chr1 (230-286)||(49868011-49868067)
chr1 (223-286)||(7732415-7732478)
chr1 (223-274)||(16033467-16033518)
chr1 (222-269)||(29701342-29701389)
chr1 (227-274)||(41974758-41974805)
chr1 (223-269)||(30678835-30678881)
chr1 (222-280)||(41032923-41032981)
chr1 (224-274)||(44641521-44641571)
chr1 (228-269)||(9116894-9116935)
chr1 (221-286)||(11014223-11014288)
chr1 (225-286)||(23772282-23772343)
chr1 (253-286)||(27687617-27687650)
chr1 (222-279)||(41973247-41973304)
[»] chr2 (23 HSPs)
chr2 (221-279)||(11931596-11931654)
chr2 (223-274)||(29896311-29896362)
chr2 (227-277)||(1238159-1238209)
chr2 (221-274)||(3197096-3197149)
chr2 (232-269)||(3904204-3904241)
chr2 (221-269)||(28277698-28277746)
chr2 (221-277)||(45032684-45032740)
chr2 (221-268)||(6238587-6238634)
chr2 (243-286)||(7262819-7262862)
chr2 (223-274)||(27244650-27244701)
chr2 (227-274)||(34364512-34364559)
chr2 (243-286)||(37830726-37830769)
chr2 (224-274)||(6723094-6723144)
chr2 (225-279)||(7537105-7537159)
chr2 (221-279)||(9517021-9517079)
chr2 (376-410)||(17897868-17897902)
chr2 (224-270)||(43356654-43356700)
chr2 (228-273)||(13922650-13922695)
chr2 (249-286)||(30045472-30045509)
chr2 (249-286)||(30050635-30050672)
chr2 (249-286)||(30141679-30141716)
chr2 (228-277)||(30929059-30929108)
chr2 (373-410)||(39955494-39955531)
[»] chr8 (15 HSPs)
chr8 (221-274)||(7553670-7553723)
chr8 (363-410)||(3036534-3036581)
chr8 (243-286)||(24696011-24696054)
chr8 (221-279)||(26886054-26886112)
chr8 (223-279)||(8837913-8837969)
chr8 (223-274)||(6109162-6109213)
chr8 (224-279)||(6447183-6447238)
chr8 (222-281)||(13575281-13575340)
chr8 (227-274)||(33482166-33482213)
chr8 (223-277)||(8687859-8687913)
chr8 (224-273)||(8982561-8982610)
chr8 (229-286)||(10601762-10601819)
chr8 (221-274)||(14303156-14303209)
chr8 (224-269)||(32223901-32223946)
chr8 (221-274)||(33620889-33620942)
[»] chr6 (11 HSPs)
chr6 (243-286)||(2692228-2692271)
chr6 (224-268)||(7927694-7927738)
chr6 (362-410)||(28478663-28478711)
chr6 (362-410)||(29791118-29791166)
chr6 (223-274)||(12412270-12412321)
chr6 (224-286)||(8809300-8809362)
chr6 (224-270)||(12336347-12336393)
chr6 (224-266)||(21884981-21885023)
chr6 (223-276)||(2445292-2445345)
chr6 (223-276)||(3373396-3373449)
chr6 (221-286)||(31971520-31971585)
[»] chr5 (11 HSPs)
chr5 (223-274)||(40445976-40446027)
chr5 (221-286)||(1082224-1082289)
chr5 (219-279)||(8545001-8545061)
chr5 (221-269)||(10531531-10531579)
chr5 (227-281)||(17046331-17046385)
chr5 (223-269)||(28447486-28447532)
chr5 (216-274)||(34436837-34436895)
chr5 (224-269)||(4432110-4432155)
chr5 (241-274)||(7861018-7861051)
chr5 (221-286)||(8885246-8885311)
chr5 (224-273)||(42663222-42663271)
[»] chr3 (19 HSPs)
chr3 (222-269)||(7827500-7827547)
chr3 (222-269)||(7829888-7829935)
chr3 (223-274)||(32753821-32753872)
chr3 (218-273)||(48924337-48924392)
chr3 (228-274)||(48517669-48517715)
chr3 (229-274)||(12976619-12976664)
chr3 (222-274)||(28093346-28093398)
chr3 (221-279)||(7738660-7738718)
chr3 (229-279)||(10922320-10922370)
chr3 (231-281)||(39869817-39869867)
chr3 (225-279)||(46226089-46226143)
chr3 (224-269)||(7464513-7464558)
chr3 (225-274)||(8139710-8139759)
chr3 (221-286)||(9598430-9598495)
chr3 (220-269)||(22462302-22462351)
chr3 (220-269)||(23332640-23332689)
chr3 (221-274)||(28052399-28052452)
chr3 (373-410)||(31110632-31110669)
chr3 (224-277)||(38387966-38388019)
[»] scaffold0160 (1 HSPs)
scaffold0160 (223-286)||(22904-22967)
[»] scaffold0143 (1 HSPs)
scaffold0143 (227-274)||(4463-4510)
[»] scaffold0016 (1 HSPs)
scaffold0016 (224-274)||(99031-99081)
[»] scaffold0045 (2 HSPs)
scaffold0045 (224-273)||(63856-63905)
scaffold0045 (224-273)||(71188-71237)


Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-105; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 532 - 811
Target Start/End: Original strand, 39292503 - 39292786
Alignment:
Q  532 tctacggtcttacttagggtgtgttagtgtcatctccctaagctccttcaagcatgggtgttctcttggaaacacgcttgtttcaagtatatactgcaca 631  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39292503 tctacggtcttacttagggtgtgttagtgtcatctccctaagctccttcaagcatgggtgttctcttggaaacacgcttgtttcaagtatatactgcaca 39292602  T
Q  632 atacaagg--nnnnnnnnnatattacaaagcagaacacaagtgttaattaaattaccgaatataagacttagtaattgacaaaaatatcttgcaactata 729  Q
    ||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  39292603 atacaaggtttttttttttatattacaaagcagaacacaagtgttaattaaattaccgaatataagacttagtagttgagaaaaatatcttgcaactata 39292702  T
Q  730 tttc--nnnnnnnntattgcaactagttatatagatctcgaacaagatttacggtagaagaagatggaaaagaatagtagatat 811  Q
    ||||          ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  39292703 tttccaaaaaaatatattgcaactagttataaagatctcgaacaagatttacggtagaagaagaaggaaaagaatagtagatat 39292786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 39292087 - 39292209
Alignment:
Q  1 cgggtgtagccatcatatacctgttttacaacatcaatcgtgtatgtcatta----attaattaatacatctttatgtgtaaactttcaagatttgagta 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||| ||||| ||||||    
T  39292087 cgggtgtagccatcatatacctgttttacaacatcaatcgtgtatgtcattaattaattaattaatacatctttatgtgtaaactttgaagatatgagta 39292186  T
Q  97 attgagattcatttaaaacatta 119  Q
    |||||||||||||||||||||||    
T  39292187 attgagattcatttaaaacatta 39292209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 559 - 632
Target Start/End: Complemental strand, 39235494 - 39235421
Alignment:
Q  559 tgtcatctccctaagctccttcaagcatgggtgttctcttggaaacacgcttgtttcaagtatatactgcacaa 632  Q
    ||||||||| |  |||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||    
T  39235494 tgtcatctcacggagctccttcaagcaagggtgttctcttggaaacacacttgtgtcaagtatatactgcacaa 39235421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 571 - 634
Target Start/End: Complemental strand, 39047822 - 39047759
Alignment:
Q  571 aagctccttcaagcatgggtgttctcttggaaacacgcttgtttcaagtatatactgcacaata 634  Q
    ||||||||||||||||||||| |||||||||||||| || || |||||||||||||||||||||    
T  39047822 aagctccttcaagcatgggtgctctcttggaaacacactggtctcaagtatatactgcacaata 39047759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 559 - 632
Target Start/End: Complemental strand, 39053836 - 39053763
Alignment:
Q  559 tgtcatctccctaagctccttcaagcatgggtgttctcttggaaacacgcttgtttcaagtatatactgcacaa 632  Q
    ||||||||| | ||||||||||||||| ||||||||  |||||||||| ||||| |||||||||||||||||||    
T  39053836 tgtcatctcacgaagctccttcaagcaagggtgttcatttggaaacacacttgtgtcaagtatatactgcacaa 39053763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 36203229 - 36203290
Alignment:
Q  223 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagatt 284  Q
    |||||||||||| |||  | |||||||| |||||||||||||||||| |||| |||||||||    
T  36203229 tgtcctcgtgagcttagctcagttgataaggacaatgcataatatatgcaaggtccgagatt 36203290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 37175842 - 37175798
Alignment:
Q  362 cttaaagtagcaactttatcttaaaaattatgcattcaacatatt 406  Q
    ||||||||||||||||||||||  |||||||||||||||| ||||    
T  37175842 cttaaagtagcaactttatcttggaaattatgcattcaacttatt 37175798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 39292309 - 39292353
Alignment:
Q  362 cttaaagtagcaactttatcttaaaaattatgcattcaacatatt 406  Q
    ||||||||||||||||||||||  |||||||||||||||| ||||    
T  39292309 cttaaagtagcaactttatcttggaaattatgcattcaacttatt 39292353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 20096338 - 20096287
Alignment:
Q  223 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    ||||||||||||||||| | ||||| |||||| |||||||||||||| ||||    
T  20096338 tgtcctcgtgagtttaactcagttggtagggataatgcataatatatgcaag 20096287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 224 - 274
Target Start/End: Original strand, 13121538 - 13121588
Alignment:
Q  224 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    ||||||||||| |||  ||||||| ||||||||||||||||||||| ||||    
T  13121538 gtcctcgtgagcttagcttagttggtagggacaatgcataatatatgcaag 13121588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 221 - 279
Target Start/End: Original strand, 13276120 - 13276178
Alignment:
Q  221 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 279  Q
    |||||||||||||| |||| | | ||| ||||||||||||||||||||| |||| ||||    
T  13276120 tttgtcctcgtgagcttaactcaattggtagggacaatgcataatatatgcaaggtccg 13276178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 18541506 - 18541544
Alignment:
Q  235 tttaatttagttgatagggacaatgcataatatatacaa 273  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  18541506 tttaatttagttgatagaaacaatgcataatatatacaa 18541544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 224 - 274
Target Start/End: Original strand, 18635524 - 18635574
Alignment:
Q  224 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    |||| |||||| |||| | |||||||| |||||||||||||||||||||||    
T  18635524 gtccccgtgagcttaactcagttgataaggacaatgcataatatatacaag 18635574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 223 - 269
Target Start/End: Complemental strand, 22164337 - 22164291
Alignment:
Q  223 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 269  Q
    ||||||||||||||||  ||||||| |||| ||||||||||||||||    
T  22164337 tgtcctcgtgagtttagcttagttggtaggaacaatgcataatatat 22164291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 29737666 - 29737712
Alignment:
Q  223 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 269  Q
    |||||| ||||| |||||||||||| |||| ||||||||||||||||    
T  29737666 tgtccttgtgagcttaatttagttgctaggaacaatgcataatatat 29737712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 33024150 - 33024192
Alignment:
Q  224 gtcctcgtgagtttaatttagttgatagggacaatgcataata 266  Q
    |||||||||||||||| ||||||| || |||||||||||||||    
T  33024150 gtcctcgtgagtttaacttagttggtatggacaatgcataata 33024192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 43722758 - 43722804
Alignment:
Q  223 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 269  Q
    ||||||||||||||||| | ||||| || ||||||||||||||||||    
T  43722758 tgtcctcgtgagtttaactcagttggtatggacaatgcataatatat 43722804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 8494978 - 8495035
Alignment:
Q  221 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatcc 278  Q
    |||||||||||||  |||  | ||||| ||||||||||||||||||||| ||||||||    
T  8494978 tttgtcctcgtgaacttagctcagttggtagggacaatgcataatatatgcaagatcc 8495035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 286
Target Start/End: Complemental strand, 11286851 - 11286786
Alignment:
Q  221 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattca 286  Q
    ||||||||| |||| ||| || ||||| ||| ||||||||||||||||| |||| || ||||||||    
T  11286851 tttgtcctcctgagcttagttcagttggtagagacaatgcataatatatgcaaggtctgagattca 11286786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 38374956 - 38375001
Alignment:
Q  229 cgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    |||||| |||| ||||||| ||||||||||||||||||||| ||||    
T  38374956 cgtgagcttaacttagttggtagggacaatgcataatatatgcaag 38375001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 278
Target Start/End: Complemental strand, 38812919 - 38812862
Alignment:
Q  221 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatcc 278  Q
    ||||| ||||||||||||  | ||| | ||||||||||||||||||||| ||||||||    
T  38812919 tttgttctcgtgagtttagctcagtcggtagggacaatgcataatatatgcaagatcc 38812862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 559 - 632
Target Start/End: Complemental strand, 7562837 - 7562764
Alignment:
Q  559 tgtcatctccctaagctccttcaagcatgggtgttctcttggaaacacgcttgtttcaagtatatactgcacaa 632  Q
    ||||||||| |  |||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||    
T  7562837 tgtcatctcacggagctccttcaagcaagggtgttctcttggaaacacacttgtgtcaagtatatactgcacaa 7562764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 223 - 286
Target Start/End: Complemental strand, 964809 - 964746
Alignment:
Q  223 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattca 286  Q
    |||||||||||| |||| | ||| |||||  ||||||||||||||||| |||||||||||||||    
T  964809 tgtcctcgtgagcttaactcagtcgatagaaacaatgcataatatatataagatccgagattca 964746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 1285132 - 1285081
Alignment:
Q  228 tcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 279  Q
    |||||||||||| | |||||||||| |||||||||||||||| |||||||||    
T  1285132 tcgtgagtttaactcagttgataggaacaatgcataatatatgcaagatccg 1285081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 3584195 - 3584260
Alignment:
Q  221 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattca 286  Q
    |||||||||| ||| |||| ||||||| || |||||||||||||||||| |||| | |||||||||    
T  3584195 tttgtcctcgcgagcttaacttagttggtaaggacaatgcataatatatgcaaggtacgagattca 3584260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 22267571 - 22267620
Alignment:
Q  220 ctttgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 269  Q
    |||||||||||||||||||| | ||||| ||| |||||||||||||||||    
T  22267571 ctttgtcctcgtgagtttaactcagttggtagagacaatgcataatatat 22267620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 363 - 408
Target Start/End: Original strand, 24934749 - 24934794
Alignment:
Q  363 ttaaagtagcaactttatcttaaaaattatgcattcaacatattaa 408  Q
    |||||||||||||||||||||| ||||| |||||||||| ||||||    
T  24934749 ttaaagtagcaactttatcttagaaattgtgcattcaacttattaa 24934794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 3948051 - 3948099
Alignment:
Q  227 ctcgtgagtttaatttagttgatagggacaatgcataatatatacaaga 275  Q
    ||||||||||||| | ||||||||| ||||||||||||||||| |||||    
T  3948051 ctcgtgagtttaactcagttgatagagacaatgcataatatatgcaaga 3948099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 35222916 - 35222968
Alignment:
Q  222 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    |||||||||||||||||  | |||||||||||||||||||| |||||| ||||    
T  35222916 ttgtcctcgtgagtttaggtcagttgatagggacaatgcatgatatatgcaag 35222968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 42829302 - 42829246
Alignment:
Q  223 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 279  Q
    |||||||||||| || | | ||||||||||||||||||||||||||| |||| ||||    
T  42829302 tgtcctcgtgagcttgactcagttgatagggacaatgcataatatatgcaagctccg 42829246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 20762831 - 20762874
Alignment:
Q  221 tttgtcctcgtgagtttaatttagttgatagggacaatgcataa 264  Q
    |||||||||||||||||| || |||||||||| |||||||||||    
T  20762831 tttgtcctcgtgagtttagttcagttgataggaacaatgcataa 20762874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 30857241 - 30857292
Alignment:
Q  223 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    ||||||||||||||||  ||||||| || |||||||||||||||||| ||||    
T  30857241 tgtcctcgtgagtttagcttagttggtatggacaatgcataatatatgcaag 30857292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 1399155 - 1399217
Alignment:
Q  223 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattc 285  Q
    ||||||||||||||||| | ||||| || ||||||||||| |||||| |||| || |||||||    
T  1399155 tgtcctcgtgagtttaactcagttggtatggacaatgcatgatatatgcaaggtctgagattc 1399217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 28479904 - 28479870
Alignment:
Q  243 agttgatagggacaatgcataatatatacaagatc 277  Q
    |||||||| ||||||||||||||||||||||||||    
T  28479904 agttgataaggacaatgcataatatatacaagatc 28479870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 5352323 - 5352384
Alignment:
Q  224 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattc 285  Q
    ||||||||||| |||  | ||||| || ||||||| ||||||||||||||| ||||||||||    
T  5352323 gtcctcgtgagcttagctcagttggtaaggacaatacataatatatacaaggtccgagattc 5352384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 243 - 280
Target Start/End: Complemental strand, 37307922 - 37307885
Alignment:
Q  243 agttgatagggacaatgcataatatatacaagatccga 280  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  37307922 agttgataggaacaatgcataatatatgcaagatccga 37307885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 22388244 - 22388197
Alignment:
Q  222 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 269  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||    
T  22388244 ttgtcctcgtaagtttaacttagttgatagggacaatgcataatatat 22388197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 41573338 - 41573291
Alignment:
Q  222 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 269  Q
    |||||||||||||||||| | ||||| |||||||||||||||||||||    
T  41573338 ttgtcctcgtgagtttaactcagttggtagggacaatgcataatatat 41573291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 222 - 281
Target Start/End: Complemental strand, 43840394 - 43840335
Alignment:
Q  222 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgag 281  Q
    |||||||||||||||||| | |||||||| ||||||||||||| ||||  ||||||||||    
T  43840394 ttgtcctcgtgagtttaactcagttgatatggacaatgcataaaatatgtaagatccgag 43840335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 41998344 - 41998394
Alignment:
Q  223 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaa 273  Q
    |||||||||||| |||| | |||||||||||||||| ||||||||||||||    
T  41998344 tgtcctcgtgagattaactcagttgatagggacaattcataatatatacaa 41998394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 224 - 277
Target Start/End: Complemental strand, 2884515 - 2884462
Alignment:
Q  224 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatc 277  Q
    ||||||||||  |||| | |||||||| ||||||||||||||||||||||||||    
T  2884515 gtcctcgtgaccttaactcagttgatatggacaatgcataatatatacaagatc 2884462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 18091194 - 18091247
Alignment:
Q  221 tttgtcctcgtgagtttaatttagttgatagggacaatgcat-aatatatacaa 273  Q
    |||||||||||||| |||| | |||||||||||||||||||| |||||||||||    
T  18091194 tttgtcctcgtgagcttaactcagttgatagggacaatgcataaatatatacaa 18091247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 27853349 - 27853410
Alignment:
Q  224 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattc 285  Q
    ||||||||||| |||| | ||||| || | |||||||||||||||||||||||||| |||||    
T  27853349 gtcctcgtgagcttaactcagttggtatgaacaatgcataatatatacaagatccgggattc 27853410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 44220982 - 44221031
Alignment:
Q  225 tcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    |||||||||| |||| ||||||||||| ||||||||| ||||||||||||    
T  44220982 tcctcgtgagcttaacttagttgatagagacaatgcacaatatatacaag 44221031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 49868011 - 49868067
Alignment:
Q  230 gtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattca 286  Q
    |||||||||| | |||||||| ||| |||||||||||||| |||| |||||||||||    
T  49868011 gtgagtttaactcagttgatatggataatgcataatatatgcaaggtccgagattca 49868067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 286
Target Start/End: Original strand, 7732415 - 7732478
Alignment:
Q  223 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattca 286  Q
    ||||||||||||||||  | |||||||  ||| |||||||||||||| ||||||||| ||||||    
T  7732415 tgtcctcgtgagtttagctcagttgatttggataatgcataatatatccaagatccgggattca 7732478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 16033518 - 16033467
Alignment:
Q  223 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    |||||||||||| || | | ||||||||||||||||||||||||||| ||||    
T  16033518 tgtcctcgtgagcttgactcagttgatagggacaatgcataatatatgcaag 16033467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 29701389 - 29701342
Alignment:
Q  222 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 269  Q
    ||||| ||||||| |||| |||||||||| ||||||||||||||||||    
T  29701389 ttgtcttcgtgagcttaacttagttgatatggacaatgcataatatat 29701342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 274
Target Start/End: Original strand, 41974758 - 41974805
Alignment:
Q  227 ctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    |||||||||||| || |||||||||||| |||||||||||||| ||||    
T  41974758 ctcgtgagtttagttcagttgatagggataatgcataatatatgcaag 41974805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 223 - 269
Target Start/End: Complemental strand, 30678881 - 30678835
Alignment:
Q  223 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 269  Q
    |||||||||||| |||| | ||||| |||||||||||||||||||||    
T  30678881 tgtcctcgtgagcttaactcagttggtagggacaatgcataatatat 30678835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 222 - 280
Target Start/End: Original strand, 41032923 - 41032981
Alignment:
Q  222 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccga 280  Q
    ||||||||||||| |||| | |||||||| | ||||||||||| ||||||||| |||||    
T  41032923 ttgtcctcgtgagcttaactcagttgatatgaacaatgcataaaatatacaaggtccga 41032981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 224 - 274
Target Start/End: Original strand, 44641521 - 44641571
Alignment:
Q  224 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    |||||||||||||||  | |||||||| |||||||||||||||||| ||||    
T  44641521 gtcctcgtgagtttagctcagttgatatggacaatgcataatatatgcaag 44641571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 9116935 - 9116894
Alignment:
Q  228 tcgtgagtttaatttagttgatagggacaatgcataatatat 269  Q
    |||||||||||| | |||||||| ||||||||||||||||||    
T  9116935 tcgtgagtttaactcagttgatatggacaatgcataatatat 9116894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 11014223 - 11014288
Alignment:
Q  221 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattca 286  Q
    ||||||||||||||||||  | ||||| ||| |||| |||||||||||| |||||| || ||||||    
T  11014223 tttgtcctcgtgagtttagctcagttggtagagacagtgcataatatatgcaagattcgggattca 11014288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 286
Target Start/End: Complemental strand, 23772343 - 23772282
Alignment:
Q  225 tcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattca 286  Q
    ||||||||| |||| || ||||  |||| |||||| ||||||||||||||||| ||||||||    
T  23772343 tcctcgtgaatttagttcagtttgtaggaacaatgtataatatatacaagatctgagattca 23772282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 253 - 286
Target Start/End: Complemental strand, 27687650 - 27687617
Alignment:
Q  253 gacaatgcataatatatacaagatccgagattca 286  Q
    |||||||||||||||||||||||| |||||||||    
T  27687650 gacaatgcataatatatacaagatacgagattca 27687617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 222 - 279
Target Start/End: Original strand, 41973247 - 41973304
Alignment:
Q  222 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 279  Q
    ||||||||| ||| |||| ||| ||| ||||||||||||||||||||| |||| ||||    
T  41973247 ttgtcctcgcgagcttaacttaattggtagggacaatgcataatatatgcaaggtccg 41973304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 221 - 279
Target Start/End: Original strand, 11931596 - 11931654
Alignment:
Q  221 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 279  Q
    |||||||||||||| ||| |||| ||| ||||||||||||||||||||| |||||||||    
T  11931596 tttgtcctcgtgagcttagtttaattggtagggacaatgcataatatatgcaagatccg 11931654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 29896362 - 29896311
Alignment:
Q  223 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    ||||||||||||||||||| |||||||||  |||||||||||||||| ||||    
T  29896362 tgtcctcgtgagtttaattcagttgatagaaacaatgcataatatatgcaag 29896311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 227 - 277
Target Start/End: Original strand, 1238159 - 1238209
Alignment:
Q  227 ctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatc 277  Q
    |||||||| |||| | | |||||||||||||||||||||||||||||||||    
T  1238159 ctcgtgagcttaactcaattgatagggacaatgcataatatatacaagatc 1238209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 3197149 - 3197096
Alignment:
Q  221 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    ||||||||||||||||||  | ||||| ||||||||||||||||||||| ||||    
T  3197149 tttgtcctcgtgagtttagctcagttggtagggacaatgcataatatatgcaag 3197096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 3904204 - 3904241
Alignment:
Q  232 gagtttaatttagttgatagggacaatgcataatatat 269  Q
    |||||||| |||||||||||||||||||||||||||||    
T  3904204 gagtttaacttagttgatagggacaatgcataatatat 3904241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 28277746 - 28277698
Alignment:
Q  221 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 269  Q
    ||||||||||||||||||  ||||||| || ||||||||||||||||||    
T  28277746 tttgtcctcgtgagtttagcttagttggtaaggacaatgcataatatat 28277698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 221 - 277
Target Start/End: Original strand, 45032684 - 45032740
Alignment:
Q  221 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatc 277  Q
    |||||||||||||| |||  | ||||| ||||||||||||||||||||| |||||||    
T  45032684 tttgtcctcgtgagcttacctcagttggtagggacaatgcataatatatgcaagatc 45032740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 6238634 - 6238587
Alignment:
Q  221 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatata 268  Q
    ||||||||||||||||||  ||| ||| ||||||||||||||||||||    
T  6238634 tttgtcctcgtgagtttagcttaattggtagggacaatgcataatata 6238587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 7262819 - 7262862
Alignment:
Q  243 agttgatagggacaatgcataatatatacaagatccgagattca 286  Q
    |||||||| ||||||||||||||||||||||||||  |||||||    
T  7262819 agttgatatggacaatgcataatatatacaagatcaaagattca 7262862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 27244650 - 27244701
Alignment:
Q  223 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    |||||||||||| |||  | ||||||||||||||||||||||||||| ||||    
T  27244650 tgtcctcgtgagcttagctcagttgatagggacaatgcataatatatgcaag 27244701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 274
Target Start/End: Complemental strand, 34364559 - 34364512
Alignment:
Q  227 ctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    ||||||||||||| ||||||| |||| | |||||||||||||||||||    
T  34364559 ctcgtgagtttaacttagttggtaggaataatgcataatatatacaag 34364512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 37830726 - 37830769
Alignment:
Q  243 agttgatagggacaatgcataatatatacaagatccgagattca 286  Q
    ||||| |||||||||| ||||||||||||||||||| |||||||    
T  37830726 agttggtagggacaatacataatatatacaagatccaagattca 37830769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 6723144 - 6723094
Alignment:
Q  224 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    |||||||||||||||| | |||||||| |||||||| ||||||||| ||||    
T  6723144 gtcctcgtgagtttaactcagttgatatggacaatgtataatatatgcaag 6723094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 7537105 - 7537159
Alignment:
Q  225 tcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 279  Q
    |||||||||| |||| | |||||||||| |||||||||||||||| |||| ||||    
T  7537105 tcctcgtgagattaactcagttgataggaacaatgcataatatatgcaaggtccg 7537159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 9517079 - 9517021
Alignment:
Q  221 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 279  Q
    |||||||||||||| |||  | ||||| || | ||||||||||||||||||||||||||    
T  9517079 tttgtcctcgtgagattagctcagttggtatgaacaatgcataatatatacaagatccg 9517021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 376 - 410
Target Start/End: Complemental strand, 17897902 - 17897868
Alignment:
Q  376 tttatcttaaaaattatgcattcaacatattaaaa 410  Q
    ||||||||||||||| |||||||||||||||||||    
T  17897902 tttatcttaaaaattgtgcattcaacatattaaaa 17897868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 43356700 - 43356654
Alignment:
Q  224 gtcctcgtgagtttaatttagttgatagggacaatgcataatatata 270  Q
    ||||| |||||||||  ||||||| ||||||||||||||||||||||    
T  43356700 gtcctagtgagtttatcttagttgttagggacaatgcataatatata 43356654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 228 - 273
Target Start/End: Complemental strand, 13922695 - 13922650
Alignment:
Q  228 tcgtgagtttaatttagttgatagggacaatgcataatatatacaa 273  Q
    ||||||| |||| | ||||| |||||||||||||||||||||||||    
T  13922695 tcgtgagcttaactcagttggtagggacaatgcataatatatacaa 13922650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 30045472 - 30045509
Alignment:
Q  249 tagggacaatgcataatatatacaagatccgagattca 286  Q
    |||||||||||||||||||||||||| | |||||||||    
T  30045472 tagggacaatgcataatatatacaaggttcgagattca 30045509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 30050635 - 30050672
Alignment:
Q  249 tagggacaatgcataatatatacaagatccgagattca 286  Q
    |||||||||||||||||||||||||| | |||||||||    
T  30050635 tagggacaatgcataatatatacaaggttcgagattca 30050672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 30141679 - 30141716
Alignment:
Q  249 tagggacaatgcataatatatacaagatccgagattca 286  Q
    |||||||||||||||||||||||||| | |||||||||    
T  30141679 tagggacaatgcataatatatacaaggttcgagattca 30141716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 30929108 - 30929059
Alignment:
Q  228 tcgtgagtttaatttagttgatagggacaatgcataatatatacaagatc 277  Q
    |||| ||||||| | |||||||| ||||||||||||||||||| ||||||    
T  30929108 tcgtaagtttaactcagttgatatggacaatgcataatatatataagatc 30929059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 373 - 410
Target Start/End: Complemental strand, 39955531 - 39955494
Alignment:
Q  373 aactttatcttaaaaattatgcattcaacatattaaaa 410  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  39955531 aactttatctttaaaattgtgcattcaacatattaaaa 39955494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 7553670 - 7553723
Alignment:
Q  221 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    ||||||||||||||||||| | ||||| ||||||||||||||||||||| ||||    
T  7553670 tttgtcctcgtgagtttaactcagttggtagggacaatgcataatatatgcaag 7553723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 363 - 410
Target Start/End: Complemental strand, 3036581 - 3036534
Alignment:
Q  363 ttaaagtagcaactttatcttaaaaattatgcattcaacatattaaaa 410  Q
    |||||||||||||||||||||||||||| || ||||||| ||||||||    
T  3036581 ttaaagtagcaactttatcttaaaaattgtgtattcaacttattaaaa 3036534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 24696054 - 24696011
Alignment:
Q  243 agttgatagggacaatgcataatatatacaagatccgagattca 286  Q
    |||||||| |||||||||||||||||| ||||||||||||||||    
T  24696054 agttgatatggacaatgcataatatatgcaagatccgagattca 24696011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 26886112 - 26886054
Alignment:
Q  221 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 279  Q
    ||||||||||||||||||| ||||||| || ||||||||||||| ||||  ||||||||    
T  26886112 tttgtcctcgtgagtttaacttagttggtatggacaatgcataaaatatgtaagatccg 26886054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 223 - 279
Target Start/End: Original strand, 8837913 - 8837969
Alignment:
Q  223 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 279  Q
    |||||||||||  |||| |  ||||||||||||||||||||||||||||||| ||||    
T  8837913 tgtcctcgtgaacttaactcggttgatagggacaatgcataatatatacaaggtccg 8837969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 6109162 - 6109213
Alignment:
Q  223 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    ||||||||||||||||  | |||||||| ||||||||||||| |||||||||    
T  6109162 tgtcctcgtgagtttatatcagttgatatggacaatgcataaaatatacaag 6109213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 279
Target Start/End: Original strand, 6447183 - 6447238
Alignment:
Q  224 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 279  Q
    |||||||||||||||| | ||||| || |||||||||||||||||| |||| ||||    
T  6447183 gtcctcgtgagtttaactcagttggtatggacaatgcataatatatgcaaggtccg 6447238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 281
Target Start/End: Original strand, 13575281 - 13575340
Alignment:
Q  222 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgag 281  Q
    |||||||||||||||||  | ||||| |||||||||||||||| |||| |||| ||||||    
T  13575281 ttgtcctcgtgagtttagctcagttggtagggacaatgcataacatatgcaagttccgag 13575340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 274
Target Start/End: Complemental strand, 33482213 - 33482166
Alignment:
Q  227 ctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    ||||||||||||  ||||||||||||||||||||||||| ||| ||||    
T  33482213 ctcgtgagtttagcttagttgatagggacaatgcataatttatgcaag 33482166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 223 - 277
Target Start/End: Original strand, 8687859 - 8687913
Alignment:
Q  223 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatc 277  Q
    ||||||||||| ||||| | | ||| ||||||||||| |||||||||||||||||    
T  8687859 tgtcctcgtgaatttaactcaattggtagggacaatgtataatatatacaagatc 8687913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 8982561 - 8982610
Alignment:
Q  224 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaa 273  Q
    |||||||||||||||||| ||||  || | ||||||||||||||||||||    
T  8982561 gtcctcgtgagtttaattcagttagtatgaacaatgcataatatatacaa 8982610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 10601762 - 10601819
Alignment:
Q  229 cgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattca 286  Q
    |||||| |||||| ||||| || |||||||||||||||||| |||||| || ||||||    
T  10601762 cgtgagcttaattcagttggtatggacaatgcataatatatgcaagattcgggattca 10601819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 14303156 - 14303209
Alignment:
Q  221 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    ||||||||||||||||||  | ||||| || |||||||| ||||||||||||||    
T  14303156 tttgtcctcgtgagtttagctcagttggtatggacaatgtataatatatacaag 14303209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 32223946 - 32223901
Alignment:
Q  224 gtcctcgtgagtttaatttagttgatagggacaatgcataatatat 269  Q
    ||||||||||| ||| || ||||||||| |||||||||||||||||    
T  32223946 gtcctcgtgagcttagttcagttgatagagacaatgcataatatat 32223901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 33620889 - 33620942
Alignment:
Q  221 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    |||||| |||||||||||| | ||||  || |||||||||||||||||||||||    
T  33620889 tttgtcttcgtgagtttaactcagttagtatggacaatgcataatatatacaag 33620942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 2692228 - 2692271
Alignment:
Q  243 agttgatagggacaatgcataatatatacaagatccgagattca 286  Q
    |||||||| |||||||||||||||||| ||||||||||||||||    
T  2692228 agttgatatggacaatgcataatatatgcaagatccgagattca 2692271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 7927694 - 7927738
Alignment:
Q  224 gtcctcgtgagtttaatttagttgatagggacaatgcataatata 268  Q
    ||||||||||| ||| || ||||||||||||||||||||||||||    
T  7927694 gtcctcgtgagcttagttcagttgatagggacaatgcataatata 7927738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 362 - 410
Target Start/End: Complemental strand, 28478711 - 28478663
Alignment:
Q  362 cttaaagtagcaactttatcttaaaaattatgcattcaacatattaaaa 410  Q
    |||||||||| |||||||||||| ||||| || ||||||||||||||||    
T  28478711 cttaaagtagaaactttatcttagaaattgtgtattcaacatattaaaa 28478663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 362 - 410
Target Start/End: Complemental strand, 29791166 - 29791118
Alignment:
Q  362 cttaaagtagcaactttatcttaaaaattatgcattcaacatattaaaa 410  Q
    |||||||||| |||||||||||| ||||| || ||||||||||||||||    
T  29791166 cttaaagtagaaactttatcttagaaattgtgtattcaacatattaaaa 29791118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 12412270 - 12412321
Alignment:
Q  223 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    |||||||||||| |||| ||||||| ||| ||||||||||||||||| ||||    
T  12412270 tgtcctcgtgagcttaacttagttggtagagacaatgcataatatatgcaag 12412321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 224 - 286
Target Start/End: Original strand, 8809300 - 8809362
Alignment:
Q  224 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattca 286  Q
    ||||||||||||||| || | ||||||   |||||||||||||||| ||||||||||| ||||    
T  8809300 gtcctcgtgagtttagttcaattgataaaaacaatgcataatatatgcaagatccgaggttca 8809362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 12336393 - 12336347
Alignment:
Q  224 gtcctcgtgagtttaatttagttgatagggacaatgcataatatata 270  Q
    |||||||||||||||| | |||| ||| |||||||||||||||||||    
T  12336393 gtcctcgtgagtttaactcagttaatatggacaatgcataatatata 12336347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 21884981 - 21885023
Alignment:
Q  224 gtcctcgtgagtttaatttagttgatagggacaatgcataata 266  Q
    |||||||| ||||||| ||| ||||||||||||||||||||||    
T  21884981 gtcctcgtaagtttaacttaattgatagggacaatgcataata 21885023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 276
Target Start/End: Original strand, 2445292 - 2445345
Alignment:
Q  223 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagat 276  Q
    ||||||||| || |||| | |||||||| | |||||||||||||||||||||||    
T  2445292 tgtcctcgtaagcttaactcagttgatatgaacaatgcataatatatacaagat 2445345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 276
Target Start/End: Complemental strand, 3373449 - 3373396
Alignment:
Q  223 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagat 276  Q
    |||| |||||| ||||| | |||||||| |||||||||||||||||| ||||||    
T  3373449 tgtcttcgtgaatttaactcagttgatatggacaatgcataatatatgcaagat 3373396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 31971520 - 31971585
Alignment:
Q  221 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattca 286  Q
    ||||||||||| || |||| | ||||| || |||||||||||||||||| |||| |||||| ||||    
T  31971520 tttgtcctcgtaagcttaactcagttggtaaggacaatgcataatatatgcaaggtccgaggttca 31971585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 40445976 - 40446027
Alignment:
Q  223 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    ||||||||||||||||| | |||||||| |||||||||||||||||| ||||    
T  40445976 tgtcctcgtgagtttaactcagttgataaggacaatgcataatatatgcaag 40446027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 286
Target Start/End: Complemental strand, 1082289 - 1082224
Alignment:
Q  221 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattca 286  Q
    |||| |||| |||| ||| || ||||| ||||||||||| |||||||||||||| |||||||||||    
T  1082289 tttgccctcatgagcttagttcagttggtagggacaatgtataatatatacaaggtccgagattca 1082224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 8545061 - 8545001
Alignment:
Q  219 tctttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 279  Q
    ||||||| |||||||| |||| | |||||||| |||||||||||||||||| |||| ||||    
T  8545061 tctttgttctcgtgagcttaactcagttgataaggacaatgcataatatatgcaaggtccg 8545001  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 221 - 269
Target Start/End: Original strand, 10531531 - 10531579
Alignment:
Q  221 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 269  Q
    |||||||||||||| ||| |||||||| || ||||||||||||||||||    
T  10531531 tttgtcctcgtgagcttagtttagttgctatggacaatgcataatatat 10531579  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 17046331 - 17046385
Alignment:
Q  227 ctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgag 281  Q
    |||||||| |||| | ||||| || |||||||||||||||||| |||||||||||    
T  17046331 ctcgtgagcttaactcagttggtatggacaatgcataatatatgcaagatccgag 17046385  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 28447486 - 28447532
Alignment:
Q  223 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 269  Q
    ||||||||||||||||| | ||||  |||||||||||||||||||||    
T  28447486 tgtcctcgtgagtttaactcagttagtagggacaatgcataatatat 28447532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 34436837 - 34436895
Alignment:
Q  216 atgtctttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    |||||| |||||||||||| |||  | ||||| ||||||||||||||||||||| ||||    
T  34436837 atgtctctgtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaag 34436895  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 4432110 - 4432155
Alignment:
Q  224 gtcctcgtgagtttaatttagttgatagggacaatgcataatatat 269  Q
    |||||||| ||||||| | |||||||| ||||||||||||||||||    
T  4432110 gtcctcgtaagtttaactcagttgataaggacaatgcataatatat 4432155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 7861051 - 7861018
Alignment:
Q  241 ttagttgatagggacaatgcataatatatacaag 274  Q
    ||||||||||||||||||||||||||||| ||||    
T  7861051 ttagttgatagggacaatgcataatatatgcaag 7861018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 286
Target Start/End: Complemental strand, 8885311 - 8885246
Alignment:
Q  221 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattca 286  Q
    ||||||||||||||| ||| | | ||||| |||||||||||||| |||| |||| | |||||||||    
T  8885311 tttgtcctcgtgagtataactcatttgattgggacaatgcataaaatatgcaaggtacgagattca 8885246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 42663271 - 42663222
Alignment:
Q  224 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaa 273  Q
    |||||||||||||||| | ||||| |||| ||||| ||||||||||||||    
T  42663271 gtcctcgtgagtttaactcagttgttaggaacaatacataatatatacaa 42663222  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 7827500 - 7827547
Alignment:
Q  222 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 269  Q
    |||||||||||||||||| | |||||||| ||||||||||||||||||    
T  7827500 ttgtcctcgtgagtttaactcagttgatatggacaatgcataatatat 7827547  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 7829888 - 7829935
Alignment:
Q  222 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 269  Q
    |||||||||||||||||| | |||||||| ||||||||||||||||||    
T  7829888 ttgtcctcgtgagtttaactcagttgatatggacaatgcataatatat 7829935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 32753821 - 32753872
Alignment:
Q  223 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    |||||||||||| || | | ||||||||||||||||||||||||||||||||    
T  32753821 tgtcctcgtgagcttgactcagttgatagggacaatgcataatatatacaag 32753872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 218 - 273
Target Start/End: Complemental strand, 48924392 - 48924337
Alignment:
Q  218 gtctttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaa 273  Q
    |||| ||||||||||||||||  ||||||| ||||||||||| |||||||||||||    
T  48924392 gtctctgtcctcgtgagtttagcttagttggtagggacaatgtataatatatacaa 48924337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 228 - 274
Target Start/End: Original strand, 48517669 - 48517715
Alignment:
Q  228 tcgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    |||||||||||| | |||||||||| |||||||||||||||||||||    
T  48517669 tcgtgagtttaactcagttgataggaacaatgcataatatatacaag 48517715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 12976664 - 12976619
Alignment:
Q  229 cgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    ||||||||||| | ||||||||||||||||||||||||||| ||||    
T  12976664 cgtgagtttaactcagttgatagggacaatgcataatatatgcaag 12976619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 28093346 - 28093398
Alignment:
Q  222 ttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    |||||| ||||||||||||| ||||| || |||||||||||||||||| ||||    
T  28093346 ttgtccccgtgagtttaattcagttggtatggacaatgcataatatatgcaag 28093398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 221 - 279
Target Start/End: Original strand, 7738660 - 7738718
Alignment:
Q  221 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 279  Q
    |||||||||||||| |||| | ||||| |||||||||||||||| |||| |||| ||||    
T  7738660 tttgtcctcgtgagcttaactcagttggtagggacaatgcataaaatatgcaaggtccg 7738718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 10922370 - 10922320
Alignment:
Q  229 cgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 279  Q
    |||||| |||| | ||||| ||||||||||||||||||||| |||||||||    
T  10922370 cgtgagcttaactcagttggtagggacaatgcataatatatgcaagatccg 10922320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 39869867 - 39869817
Alignment:
Q  231 tgagtttaatttagttgatagggacaatgcataatatatacaagatccgag 281  Q
    ||||||||| | ||||| || ||||||||||||||||||||||| ||||||    
T  39869867 tgagtttaactcagttggtaaggacaatgcataatatatacaaggtccgag 39869817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 46226143 - 46226089
Alignment:
Q  225 tcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccg 279  Q
    ||||||||||||||| | | ||| ||||||||||||||||||||| |||| ||||    
T  46226143 tcctcgtgagtttaactcaattggtagggacaatgcataatatatgcaaggtccg 46226089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 7464558 - 7464513
Alignment:
Q  224 gtcctcgtgagtttaatttagttgatagggacaatgcataatatat 269  Q
    ||||||||||| |||| | ||||| |||||||||||||||||||||    
T  7464558 gtcctcgtgagcttaactcagttggtagggacaatgcataatatat 7464513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 8139710 - 8139759
Alignment:
Q  225 tcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    |||||||||| ||| |||||||| || |||||||||||||||||| ||||    
T  8139710 tcctcgtgagcttagtttagttggtatggacaatgcataatatatgcaag 8139759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 9598430 - 9598495
Alignment:
Q  221 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattca 286  Q
    |||||||||||||| ||| || ||||| | ||||||||| |||| |||| |||| |||||||||||    
T  9598430 tttgtcctcgtgagcttagttcagttggttgggacaatgtataaaatatgcaaggtccgagattca 9598495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 22462302 - 22462351
Alignment:
Q  220 ctttgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 269  Q
    |||||||| |||||| |||| | |||||||| ||||||||||||||||||    
T  22462302 ctttgtccccgtgagcttaactcagttgataaggacaatgcataatatat 22462351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 23332640 - 23332689
Alignment:
Q  220 ctttgtcctcgtgagtttaatttagttgatagggacaatgcataatatat 269  Q
    ||||||||||||||  |||| |||||||||| | ||||||||||||||||    
T  23332640 ctttgtcctcgtgaacttaacttagttgatatgaacaatgcataatatat 23332689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 28052452 - 28052399
Alignment:
Q  221 tttgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    |||||||| ||||||||| || ||||||||||||||| ||||||| ||| ||||    
T  28052452 tttgtccttgtgagtttagttcagttgatagggacaacgcataatttatccaag 28052399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 373 - 410
Target Start/End: Original strand, 31110632 - 31110669
Alignment:
Q  373 aactttatcttaaaaattatgcattcaacatattaaaa 410  Q
    |||||||||||||||||||||||||| | |||||||||    
T  31110632 aactttatcttaaaaattatgcattcgagatattaaaa 31110669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 38387966 - 38388019
Alignment:
Q  224 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatc 277  Q
    ||||||||||| |||  | ||||||||| ||||||||||||||||| |||||||    
T  38387966 gtcctcgtgagcttagctcagttgatagtgacaatgcataatatatgcaagatc 38388019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 286
Target Start/End: Original strand, 22904 - 22967
Alignment:
Q  223 tgtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaagatccgagattca 286  Q
    |||||||||||| ||| ||||||||||| | ||||||||||| |||| |||| |||||| ||||    
T  22904 tgtcctcgtgagcttagtttagttgatatgaacaatgcataaaatatgcaaggtccgaggttca 22967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 274
Target Start/End: Original strand, 4463 - 4510
Alignment:
Q  227 ctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    ||||||||||||  ||||||||||||||||||||||||| ||| ||||    
T  4463 ctcgtgagtttagcttagttgatagggacaatgcataatttatgcaag 4510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 224 - 274
Target Start/End: Original strand, 99031 - 99081
Alignment:
Q  224 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaag 274  Q
    ||||||||||| || | | ||||||||||||||||||||||||||| ||||    
T  99031 gtcctcgtgagcttgactcagttgatagggacaatgcataatatatgcaag 99081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 63856 - 63905
Alignment:
Q  224 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaa 273  Q
    |||||||||||||||  | ||||| ||||||||||| |||||||||||||    
T  63856 gtcctcgtgagtttagctcagttggtagggacaatgtataatatatacaa 63905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 71188 - 71237
Alignment:
Q  224 gtcctcgtgagtttaatttagttgatagggacaatgcataatatatacaa 273  Q
    |||||||||||||||  | ||||| ||||||||||| |||||||||||||    
T  71188 gtcctcgtgagtttagctcagttggtagggacaatgtataatatatacaa 71237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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