View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_high_31 (Length: 344)
Name: NF3055_high_31
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 53616331 - 53616668
Alignment:
| Q |
1 |
tatttatcatttttcatttctctcctgcacaaacggaattccgtttctccgccggagtattcatttcaacaacaatgctgtaatcgtcgccgtccgtaac |
100 |
Q |
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| T |
53616331 |
tatttatcatttttcatttctctcctacacaaacggaattccgtttctccgccggagtattcatttcaacaacaatgctgtaatcgtcgccgtccgtaac |
53616430 |
T |
|
| Q |
101 |
ggcgatccgtgatagcgagcgtttcatctttctcattcaacaacgctctctatcacatttcttctctaaatctcgttagcgttttctgtcaacggcaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
53616431 |
ggcgatccgtgatagcgagcgtttcatctttctcattcaacaacgctctctatcacatttcttctctaaatctcgttaacgttttctgtcaacggcaaca |
53616530 |
T |
|
| Q |
201 |
atggctcctagtccgaaatctgaagccgtcgtttaccctcatggtaacctcgatttgaaaatcgttgaagctcgttatctaccaaacatggatatgcttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53616531 |
atggctcctagtccgaaatctgaagccgtcgtttaccttcatggtaacctcgatttgaaaatcgttgaagctcgttatctaccaaacatggatatgcttt |
53616630 |
T |
|
| Q |
301 |
cagagcgttttagaagattcttctccgctttcatctca |
338 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||| |
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| T |
53616631 |
cagagcgttttagaagattcttctccgctttcaactca |
53616668 |
T |
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