View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_high_32 (Length: 340)
Name: NF3055_high_32
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 105 - 335
Target Start/End: Complemental strand, 15807425 - 15807196
Alignment:
| Q |
105 |
aaaaacacaccttttcctcaatagtttgtggagttagcaaagtcttcagtacttcatacaacacagttgcaatctgaacgttcctaaccatttcctccct |
204 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15807425 |
aaaaacgcaccttctcctcaatagtttgtggagttagcaaagtcttcagtacttcatacaacacagttgcaatctgaacgttcctaaccatttcctccct |
15807326 |
T |
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| Q |
205 |
acagaagtaatatcagaagataagacaattgtaaaataacttgattcacacaatgtgcaagagcaagttaaagtaagatcaatcaagccttacggttttt |
304 |
Q |
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||| || | |||||||||||||| || |||||||| | |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15807325 |
aca-aaacagcatcagaagataagataaatgtaaaatcatatgattcacacaacgtgcaagagcaagtttaagtaagatcaatcaagccttacggttttt |
15807227 |
T |
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| Q |
305 |
tagtaaattcaccatcccggattcttttctc |
335 |
Q |
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| T |
15807226 |
tcgtaaattcaccatcccggattctcttctc |
15807196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 105 - 335
Target Start/End: Complemental strand, 45929688 - 45929457
Alignment:
| Q |
105 |
aaaaacacaccttttcctcaatagtttgtggagttagcaaagtcttcagtacttcatacaacacagttgcaatctgaacgttcctaaccatttcctccct |
204 |
Q |
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||||||| ||||| ||||||||| |||||||| |||||| |||||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
45929688 |
aaaaacataccttctcctcaatattttgtggacttagcatagtcttcagtgcttcaaacaacacagttgcaatctgaacattcttaaccatttcctccct |
45929589 |
T |
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| Q |
205 |
acagaagtaatatcagaag-ataagacaattgtaaaataacttgattcacacaatgtgcaagagcaagttaaagtaagatcaatcaagccttacggtttt |
303 |
Q |
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| T |
45929588 |
tcaaaagcgacaacagaagaataagacaaatataaaatcatgtgatacacacaacatgagagagcaagtttaagcaagatcaatcaagccttatggtttt |
45929489 |
T |
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| Q |
304 |
ttagtaaattcaccatcccggattcttttctc |
335 |
Q |
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|||||| |||||||||| ||||||| ||||| |
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| T |
45929488 |
ttagtattttcaccatcctggattctcttctc |
45929457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 41337685 - 41337651
Alignment:
| Q |
14 |
tataaggtcaaactcctaccactgagctgacacct |
48 |
Q |
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||||||||||||||| ||||||||||||||||||| |
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| T |
41337685 |
tataaggtcaaactcttaccactgagctgacacct |
41337651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 22825623 - 22825660
Alignment:
| Q |
17 |
aaggtcaaactcctaccactgagctgacacctcataga |
54 |
Q |
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| T |
22825623 |
aaggtcaaactcttaccactgagatgacacctcataga |
22825660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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