View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_high_35 (Length: 331)
Name: NF3055_high_35
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_high_35 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 12 - 331
Target Start/End: Complemental strand, 6857646 - 6857327
Alignment:
| Q |
12 |
gagatgaatgtcaaggtgaagagagagagaagggttaccggaaagagaggtggatatgaaggtgaaaatggaggtgggaaaaggacacgtgtcagttttg |
111 |
Q |
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| T |
6857646 |
gagaagaatgtcaaggtgaagagagagagaagggttaccggaatgagaggtggatatgaaggtgaaaatggaggtgggaaaaggacacgtgtcagttttg |
6857547 |
T |
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| Q |
112 |
gattagagtgnnnnnnnagtattttgtttgtccgagaaagaaagaaagtaatagtgacgtgtttatccttatccattgtttgttgttggattgagtttta |
211 |
Q |
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| T |
6857546 |
gattagagtgtttttttagtattttgtttgtccgagaaagaaagaaagtaatagtgacgtgtttatccttatccattgtttgttgttggattgagtttta |
6857447 |
T |
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| Q |
212 |
atacatcgtgatgaatactatgtaaatcactcgtatgtttctatttttggacaatataaatttcattacaagccacctaacgctttatttgtgaatctga |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
6857446 |
atacatcgtgatgaatactatgtaaatcactcgtatgtttctatttttggacaatataaatttcattacaagctacctaaagctttatttgtgaatctga |
6857347 |
T |
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| Q |
312 |
ttttgattttactttctttt |
331 |
Q |
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|||||||||||||||||||| |
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| T |
6857346 |
ttttgattttactttctttt |
6857327 |
T |
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