View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_high_36 (Length: 331)
Name: NF3055_high_36
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_high_36 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 37316806 - 37317136
Alignment:
| Q |
1 |
attgcctaattgagtaatgtttcttaacttttagaagcatac-----aacaaaaggtttgtactttgtacataaatcatctattgcagctgggaagtttt |
95 |
Q |
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| T |
37316806 |
attgcctaattgagtaatgtttcttaacttttagaagcatacaatacaacaaaaggtttgtactttgtacataaatcatctattgcagctgggaagtttt |
37316905 |
T |
|
| Q |
96 |
taccttgtgttattgcttcaatttgtaaacactaaagtacacactttatataattaaatatttattgtataaagttatcaccacaataatctttgtcaaa |
195 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
37316906 |
taccttgtgttattgcttcaatttgtaaacactaatgtacacactttatataattaaatatttattttataatgttatcaccacaataatctttgtcaaa |
37317005 |
T |
|
| Q |
196 |
aaataattaacacggtgtcatattatcagaacctccgtatggtaaaagattgctaggacatttga---------------tttaaatccgcaattacaat |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37317006 |
aaataattaacacggtgtcatattatcagaacctccgtatggtaaaagattgctaggacatttgatatgataaatgtgagtttaaatccgcaattacaat |
37317105 |
T |
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| Q |
281 |
cctcttagccttctagtttggggcttcacat |
311 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
37317106 |
cctcttagccttctagtttggggcttcacat |
37317136 |
T |
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