View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_high_4 (Length: 829)
Name: NF3055_high_4
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 555 - 811
Target Start/End: Original strand, 14135224 - 14135481
Alignment:
| Q |
555 |
ttccttcaaaatgatatttggtacaaattctttagcttgggcaccaatgcttggttctcatggaatctctcaaattactctgatacttatctttggcatt |
654 |
Q |
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| T |
14135224 |
ttccttaaaaatgatatttggtacaaattctttagcttgggcaccaatgcttggttctcatggaatctctcaaattactctgatacttatctttggcatt |
14135323 |
T |
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| Q |
655 |
ttcaattgctctcaatgcctaacccttccgtgaaacagcctaagaaatgaacatct-tgttcatgaagatgccctgacatgaagaaagaccaggattacc |
753 |
Q |
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| T |
14135324 |
ttcaattgctctcaatgcctaacccttccgtggaacagcctaagaaatgaacatttgtgtttatgaagatgccccgacatgaagaaagatcaggattacc |
14135423 |
T |
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| Q |
754 |
tatggttgcaccatcagtgtttcattcgatccaatgatcaatagcaggatgtcgaact |
811 |
Q |
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| T |
14135424 |
tatggatgcaccatcagtgtttcattcgatccaatgatcaatagcaggatgtcgaact |
14135481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 486 - 558
Target Start/End: Original strand, 14135079 - 14135151
Alignment:
| Q |
486 |
tctttgtaaaattgctcatgttactcttctcacaaacttcaaaagacaaaaccgatgtatgtctcaagattcc |
558 |
Q |
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| T |
14135079 |
tctttgtaaaattgctcatgttactcttctcacaaacttcaaaagacataaccgatgtatgtctcaagattcc |
14135151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 14135022 - 14135081
Alignment:
| Q |
49 |
aatttgaaaattcttaatcaaacatatattcataagttggcttgccaactaactccttct |
108 |
Q |
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| T |
14135022 |
aatttgaaaattcttaatcaaacatatattcataagttggcttgccaactaactccttct |
14135081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 14134953 - 14135004
Alignment:
| Q |
12 |
atgaaacccaaaggaagagggtggtcttggttttcgtaatttgaaaattctt |
63 |
Q |
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| T |
14134953 |
atgaaacccaaagggagagggtggtcttggttttcgtaatttgaaaattctt |
14135004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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