View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3055_high_45 (Length: 274)

Name: NF3055_high_45

Description: NF3055

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF3055_high_45

[»] chr7 (2 HSPs)

Target: chr7 (Bit Score: 149; Significance: 9e-79; HSPs: 2)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 149; E-Value: 9e-79

Query Start/End: Original strand, 16 - 168

Target Start/End: Complemental strand, 24353050 - 24352898

Alignment:

Q	16	cacttcttagtacttcaattcaagaaaaataattggtggtggtggtagttgtgcttaactcttgagttgaaaaatagtgtgataatgagttaaagggttt	115	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	24353050	cacttcttagtacttcaattcaagaaaaataattggtggtggtggtagttgtgcttaactcttgagttgaaaaatagtgtgataatgagttaaagggttt	24352951	T

Q	116	gataattgatcctcccctcgatgtaatagtaattatactaagtactaagattt	168	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	24352950	gataattgatcctcccctcgatgtaatagtaattgtactaagtactaagattt	24352898	T

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Target: chr7; HSP #2

Raw Score: 61; E-Value: 3e-26

Query Start/End: Original strand, 154 - 218

Target Start/End: Complemental strand, 24352872 - 24352808

Alignment:

Q	154	taagtactaagatttgttgtttgaataaatatcctttggtcattgactataaccattcattgaaa	218	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	24352872	taagtactaagatttgttgtttgaataaatattctttggtcattgactataaccattcattgaaa	24352808	T

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