View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_high_47 (Length: 268)
Name: NF3055_high_47
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_high_47 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 9 - 268
Target Start/End: Complemental strand, 8898516 - 8898257
Alignment:
| Q |
9 |
agcagagagaaccctgatattgataccgagatatgtgcatgtagtaatgaactgatagaaccttctagtagagctgtcgacttgatttccacatttggga |
108 |
Q |
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| T |
8898516 |
agcagagagaaccccgatattgataccgagatacgtgaatgtagtaatgaactgatagaaccttctagcagagctgtcgacttgatttccacatttggga |
8898417 |
T |
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| Q |
109 |
atctccataagcgcactaaggaaatccatgttactaatggggataaagaaaccaagtttgattttgaaaaagaactggagctttctttaagaagtgattt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8898416 |
atctccataagcgcactaaggaaatccatgttactaatggggataaagaaaccaagtttgattttgaaaaagaactggagctttctttaagaagtgattt |
8898317 |
T |
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| Q |
209 |
ttctggcagctcatgcaaacaagcaagtgaaacaactgaggagtggcaaagattgaacca |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8898316 |
ttctggcagctcatgcaaacaagcaagtgaaacaactgaggagtggcaaagattgaacca |
8898257 |
T |
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