View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_high_49 (Length: 266)
Name: NF3055_high_49
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_high_49 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 6060024 - 6060260
Alignment:
| Q |
14 |
agaggcaaccttttcactgcgagttgttataagaattttacttcccttaatcccacgttgaaaaggttttataagacgatcccaattgacataatcctca |
113 |
Q |
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| T |
6060024 |
agaggcaaccttttcactgcgagttgttataagaattttacttcccttaatcccacgttgaaaaggttttataagaagatcccaattgacataatcctca |
6060123 |
T |
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| Q |
114 |
atccaaacatcatccaaaacaacaaagaatttcttttctttcaacatatcttgcaaatcgagttgaagtaaatttagatcattcatttcacaagttcttc |
213 |
Q |
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| T |
6060124 |
atccaaacatcatccaaaacaacaaagaatttcttttctttcaacatatcttgcaaatcaagttgaagtaaatttagatcattcatttcacaagttcttc |
6060223 |
T |
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| Q |
214 |
ttgtaattgcttgtgttataatctttgtaaccctcaa |
250 |
Q |
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| T |
6060224 |
ttgtaattgcttgtgttataatctttgtaaccctcaa |
6060260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 149
Target Start/End: Original strand, 34802690 - 34802803
Alignment:
| Q |
36 |
gttgttataagaattttacttcccttaatcccacgttgaaaaggttttataagacgatcccaattgacataatcctcaatccaaacatcatccaaaacaa |
135 |
Q |
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||||||| ||||||||||||||| ||| | || | ||||||||| |||||||| || |||| || ||||||||||| |||| ||||||||||| |||| |
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| T |
34802690 |
gttgttacaagaattttacttcctttagttccgcattgaaaaggccttataagaatattccaactgtcataatcctcagtccagacatcatccaatacaa |
34802789 |
T |
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| Q |
136 |
caaagaatttcttt |
149 |
Q |
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| T |
34802790 |
ttaagaacttcttt |
34802803 |
T |
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