View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_high_55 (Length: 246)
Name: NF3055_high_55
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_high_55 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 15807545 - 15807772
Alignment:
| Q |
1 |
acagtatgagcattataatattcttccattatatgctgtcggtgttaaaccagtgatcatggaccttcccgaggtttgtatgtcgcatacatgcattgtc |
100 |
Q |
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| T |
15807545 |
acagtatgagcattataatattcttccattatatgctgtcggtgttaaaccagtgatcatggaccttcctgaggtttgtatgtcgcatacatgcattttc |
15807644 |
T |
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| Q |
101 |
aactttgctactgctaatgatattaccttcataatttccttgtgtannnnnnnnc-cctcttttctatgaaattatagatcaaagctgcaattgctgctt |
199 |
Q |
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| T |
15807645 |
aattttgctactgctaatgatattaccttcctaa-ttactgatgtttttttttccgtctcttctctatgaaattatagatcaaagctgcaattgctgctt |
15807743 |
T |
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| Q |
200 |
taagtaaggtggataatcttccaatgcct |
228 |
Q |
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| T |
15807744 |
taagtaaggtggataatcttccaatgcct |
15807772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 45930119 - 45930188
Alignment:
| Q |
155 |
ccctcttttctatgaaattatagatcaaagctgcaattgctgctttaagtaaggtggataatcttccaat |
224 |
Q |
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| T |
45930119 |
ccctattttctatgaaattatagattaaagctgcaattgctgctttaagtaaggtggataatcttccaat |
45930188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 45929951 - 45930068
Alignment:
| Q |
1 |
acagtatgagcattataatattcttccattatatgctgtcggtgttaaaccagtgatcatggaccttcccgaggtttgtatgtcgcatacatgcattgtc |
100 |
Q |
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||||||||||||||||||||| ||||| ||| ||| | |||||||| |||| | ||||||| | |||||| ||||||||||| ||| |||||||||||| |
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| T |
45929951 |
acagtatgagcattataatatccttccgttacatgttatcggtgttgaaccggagatcatgaaacttccccaggtttgtatgctgcaaacatgcattgtc |
45930050 |
T |
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| Q |
101 |
aactttgctactgctaat |
118 |
Q |
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| ||||||| |||||||| |
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| T |
45930051 |
atctttgcttctgctaat |
45930068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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