View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_high_60 (Length: 232)
Name: NF3055_high_60
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_high_60 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 35437772 - 35437557
Alignment:
| Q |
1 |
aatcatcaattaagaacaaagataaagaaagtactagaacaaacataccaagataatgttttatctaattcggtctaaattgatctacatttgaaggaga |
100 |
Q |
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| T |
35437772 |
aatcatcaattaagaacaaagataaagaaagtactagaacaaacataccaagataatgttttatccaattcgacctaaattgatctacatttgaaggaga |
35437673 |
T |
|
| Q |
101 |
tagtaacttttcaaacacactatcaat-aatctttataaaagattttaaaaagttacaaaaaattgatttcaaaagttctccatgaacatacatcaatta |
199 |
Q |
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| T |
35437672 |
tggtaatttttcaaacacaatatcaataaatcttcttaaaagattttaaaaagttacaaaaaattaatttcaaaagttctccatgaacatacctcaattt |
35437573 |
T |
|
| Q |
200 |
ctacccttttataact |
215 |
Q |
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|||||||||||||||| |
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| T |
35437572 |
ctacccttttataact |
35437557 |
T |
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