View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3055_low_1 (Length: 889)
Name: NF3055_low_1
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 787; Significance: 0; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 787; E-Value: 0
Query Start/End: Original strand, 18 - 876
Target Start/End: Complemental strand, 39261862 - 39260994
Alignment:
| Q |
18 |
accaattgggtcggtacagtttggatcatgccagctattggagcttacatagctgatgcttatctcggtcgatattggacctttgttatatcatcaggca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39261862 |
accaattgggtcggtacagtttggatcatgccagctattggagcttacatagctgatgcttatctcggtcgatattggacctttgttatatcatcaggca |
39261763 |
T |
|
| Q |
118 |
tttactttctggtaagatattcaactccaaggttttgaatttctgttgtacaagtgatctttgatattgtaacatatcataactaaatacggttattatc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39261762 |
tttactttctggtaagatattcaactccaaggttttgaatttctgttgtacaagtgatctttgatattgtaacatatcataactaaatacggttattatc |
39261663 |
T |
|
| Q |
218 |
gtttctttgatctattttacaactatgaatttgaattccatcctttgaaattacaagatcaaattaattgacgttaaaacgacatcaaaaatcatattga |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39261662 |
gtttctttgatctattttacaactatgaatttgaattccatcctttgaaattacaagatcaaattaattgacgttaaaacgacatcaaaaatcattttga |
39261563 |
T |
|
| Q |
318 |
aacactcgaatccggttgcaaccttctaataaagctttgttcaactccactagaaatttttgttttagtcttattttgtattttagcaagtaaacatgan |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39261562 |
aacactcgaatccggttgcaaccttctaataaagctttgttcaactccactagaaatttttgttttagtcttattttgtattttagcaagtaaacatgac |
39261463 |
T |
|
| Q |
418 |
nnnnnnnn----------atgtagggtatgtgtttattaactctaacagtatcactaccaatgttgagaccaccaccatgtgctcaagggatagcagaca |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39261462 |
atgtctttgattttttttatgtagggtatgtgtttattaactctaacagtatcactaccaatgttgagaccaccagcatgtgctcaagggatagcagaca |
39261363 |
T |
|
| Q |
508 |
aggattgccaaaaagcttcatcgctacaaattggtattttcttctttgctttgtacatcattgcagcaggcacagggggaactaagcccaacatttccac |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39261362 |
aggattgccaaaaagcttcatcgctacaaattggtattttcttctttgctttgtacatcattgcagcaggcacagggggaactaagcccaacatttccac |
39261263 |
T |
|
| Q |
608 |
cattggagcagaccaatttgatgagttcgagcctaaagaaaggtcccaaaaactttccttctacaattggtgggtgttttacattttaattggaaccatt |
707 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39261262 |
cattggagcagaccaatttgatgagtttgagcctaaagagaggtcccaaaaactttcattctacaattggtgggtgttttacattttaattggaaccatt |
39261163 |
T |
|
| Q |
708 |
tcagctcaaacaatattggtttacatacaagacaatgttggttttgcccttggctatgggattccaaccatattgcttgttgtttccatattggtgtttg |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39261162 |
tcagctcaaacaatattggtttacatacaagacaatgttggttttgcccttggctatgggattccaaccatattgcttgttgtttccatattggtgtttg |
39261063 |
T |
|
| Q |
808 |
tgttaggtactccactttataggcatagattaccttctggaagtcctttaactagaatggttcaagtct |
876 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39261062 |
tgttaggtactccactttataggcatagattaccttctggaagtcctttaactagaatggttcaagtct |
39260994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 427 - 876
Target Start/End: Complemental strand, 39245847 - 39245398
Alignment:
| Q |
427 |
tgtagggtatgtgtttattaactctaacagtatcactaccaatgttgagaccaccaccatgtgctcaagggatagcagacaaggattgccaaaaagcttc |
526 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||||||||||||| | |||||||||||||||||||| |||||||| | | ||||||||||||||||||| |
|
|
| T |
39245847 |
tgtagggaatgtgtttattgactctttcagtatcactaccaacgctgagaccaccaccatgtgctgtagggatagaaaaacaggattgccaaaaagcttc |
39245748 |
T |
|
| Q |
527 |
atcgctacaaattggtattttcttctttgctttgtacatcattgcagcaggcacagggggaactaagcccaacatttccaccattggagcagaccaattt |
626 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||| ||||||| ||||||||| |
|
|
| T |
39245747 |
atcactacaaattggtattttcttctttgctttgtacatcattgcagcaggcacagggggaattaagcccagcatcaccacacttggagccgaccaattt |
39245648 |
T |
|
| Q |
627 |
gatgagttcgagcctaaagaaaggtcccaaaaactttccttctacaattggtgggtgttttacattttaattggaaccatttcagctcaaacaatattgg |
726 |
Q |
| |
|
|||||||| ||||| ||||| | ||| |||||||||||||| ||||||||||||||||| |||||| |||||||| |||||| ||| ||||| |||| | |
|
|
| T |
39245647 |
gatgagtttgagccgaaagagaagtctcaaaaactttccttttacaattggtgggtgttctacattataattggagccattttagccgaaacagtattag |
39245548 |
T |
|
| Q |
727 |
tttacatacaagacaatgttggttttgcccttggctatgggattccaaccatattgcttgttgtttccatattggtgtttgtgttaggtactccacttta |
826 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| | |||||||||| |||| || || ||| |||| |
|
|
| T |
39245547 |
tctacatacaagacaatgttggttttgcccttggttatgggattccaaccatattgcttgttttttcaacattggtgtttttgtttggaacaccaattta |
39245448 |
T |
|
| Q |
827 |
taggcatagattaccttctggaagtcctttaactagaatggttcaagtct |
876 |
Q |
| |
|
||| |||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39245447 |
tagacataaattgccttctggaagtcctttaactagaatggttcaagtct |
39245398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 430 - 858
Target Start/End: Complemental strand, 39251846 - 39251420
Alignment:
| Q |
430 |
agggtatgtgtttattaactctaacagtatcactaccaatgttgagaccaccaccatgtgctcaagggatagcagacaaggattgccaaaaagcttcatc |
529 |
Q |
| |
|
|||| ||||||||||| ||||| |||| |||||||||||| ||||||||||||| ||| |||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
39251846 |
agggaatgtgtttattgactcttgcagtgtcactaccaatgctgagaccaccaccttgttctcaagggatagaagacaatgattgccaaaaagcttcatc |
39251747 |
T |
|
| Q |
530 |
gctacaaattggtattttcttctttgctttgtacatcattgcagcaggcacagggggaactaagcccaacatttccaccattggagcagaccaatttgat |
629 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| ||||| |||||| |||||||||||| |
|
|
| T |
39251746 |
actacaaattggtattttcttctttgctttgtacatcattgcagcaggcac-ggggggattaagcccaacatctccacacctggagccgaccaatttgat |
39251648 |
T |
|
| Q |
630 |
gagttcgagcctaaagaaaggtcccaaaaactttccttctacaattggtgggtgttttacattttaattggaaccatttcagctcaaacaatattggttt |
729 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| | ||||||||||||||| | |||| ||| |||| ||||| ||| ||||| ||| || | |
|
|
| T |
39251647 |
gagtttgagcctaaagagaggtcccaaaaactttcctttttcaattggtgggtgttctgcattataactggaggcattttagccgaaacaggattagtct |
39251548 |
T |
|
| Q |
730 |
acatacaagacaatgttggttttgcccttggctatgggattccaaccatattgcttgttgtttccatattggtgtttgtgttaggtactccactttatag |
829 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| |||| | |||||||||| |||| || || ||||||||||| |
|
|
| T |
39251547 |
acatacaagacaatgttgg-tttgcccttggttatgggattccaaccatcttgcttgttttttcaacattggtgtttttgtttggaacaccactttatag |
39251449 |
T |
|
| Q |
830 |
gcatagattaccttctggaagtcctttaa |
858 |
Q |
| |
|
|||||||||||||||||||| ||||||| |
|
|
| T |
39251448 |
acatagattaccttctggaagccctttaa |
39251420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 30 - 159
Target Start/End: Complemental strand, 39246473 - 39246344
Alignment:
| Q |
30 |
ggtacagtttggatcatgccagctattggagcttacatagctgatgcttatctcggtcgatattggacctttgttatatcatcaggcatttactttctgg |
129 |
Q |
| |
|
||||||||| |||| |||||| |||||| ||||||||||| || || ||||| || ||||||||||||||||| ||||||| |||||||||||| ||| |
|
|
| T |
39246473 |
ggtacagttaagatcctgccagttattggggcttacatagccgacgcctatcttggccgatattggacctttgtcgtatcatctggcatttactttttgg |
39246374 |
T |
|
| Q |
130 |
taagatattcaactccaaggttttgaattt |
159 |
Q |
| |
|
|||||||||||| || |||||||||||||| |
|
|
| T |
39246373 |
taagatattcaattctaaggttttgaattt |
39246344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 540 - 680
Target Start/End: Complemental strand, 39216484 - 39216344
Alignment:
| Q |
540 |
ggtattttcttctttgctttgtacatcattgcagcaggcacagggggaactaagcccaacatttccaccattggagcagaccaatttgatgagttcgagc |
639 |
Q |
| |
|
|||||||||||| |||| ||||||||||||| | ||| ||||| ||||| |||||||||||||| || || ||||||||||||||||| |||||||||| |
|
|
| T |
39216484 |
ggtattttcttccttgccctgtacatcattgctgtaggaacaggaggaaccaagcccaacatttctacaatgggagcagaccaatttgacgagttcgagc |
39216385 |
T |
|
| Q |
640 |
ctaaagaaaggtcccaaaaactttccttctacaattggtgg |
680 |
Q |
| |
|
| ||||| || || | ||||||||||||| |||||||||| |
|
|
| T |
39216384 |
ccaaagagagcacctataaactttccttcttcaattggtgg |
39216344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 540 - 680
Target Start/End: Complemental strand, 39194785 - 39194645
Alignment:
| Q |
540 |
ggtattttcttctttgctttgtacatcattgcagcaggcacagggggaactaagcccaacatttccaccattggagcagaccaatttgatgagttcgagc |
639 |
Q |
| |
|
|||||||||||| | || ||||||||||||| | ||| ||||| ||||| ||||| |||||||| || || ||||||||||||||||| |||||||||| |
|
|
| T |
39194785 |
ggtattttcttcctagccctgtacatcattgctgtaggaacaggaggaacaaagcctaacatttctacgatgggagcagaccaatttgacgagttcgagc |
39194686 |
T |
|
| Q |
640 |
ctaaagaaaggtcccaaaaactttccttctacaattggtgg |
680 |
Q |
| |
|
| ||||| ||| || | ||||||||||||| |||||||||| |
|
|
| T |
39194685 |
ccaaagagaggacctataaactttccttcttcaattggtgg |
39194645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 540 - 680
Target Start/End: Complemental strand, 39178022 - 39177882
Alignment:
| Q |
540 |
ggtattttcttctttgctttgtacatcattgcagcaggcacagggggaactaagcccaacatttccaccattggagcagaccaatttgatgagttcgagc |
639 |
Q |
| |
|
|||||||||||| |||| |||| |||||||| | |||||||||||| || ||||| |||||||| || || ||||||||||||||||| |||||||||| |
|
|
| T |
39178022 |
ggtattttcttccttgccctgtatatcattgccgtaggcacaggggggaccaagccaaacatttctacaatgggagcagaccaatttgacgagttcgagc |
39177923 |
T |
|
| Q |
640 |
ctaaagaaaggtcccaaaaactttccttctacaattggtgg |
680 |
Q |
| |
|
| ||||| || ||| | || ||||| |||| |||||||||| |
|
|
| T |
39177922 |
ccaaagagagatcctataagctttctttcttcaattggtgg |
39177882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 561 - 680
Target Start/End: Complemental strand, 39224081 - 39223962
Alignment:
| Q |
561 |
tacatcattgcagcaggcacagggggaactaagcccaacatttccaccattggagcagaccaatttgatgagttcgagcctaaagaaaggtcccaaaaac |
660 |
Q |
| |
|
|||||| |||| | ||| ||||| ||||| |||||||||||||| || || ||||||||||||||||| ||||||||||||||||| ||| || | || | |
|
|
| T |
39224081 |
tacatcgttgctgtaggaacaggaggaaccaagcccaacatttctacaatgggagcagaccaatttgacgagttcgagcctaaagagaggacctataagc |
39223982 |
T |
|
| Q |
661 |
tttccttctacaattggtgg |
680 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
39223981 |
tttccttcttcaattggtgg |
39223962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 39252532 - 39252404
Alignment:
| Q |
31 |
gtacagtttggatcatgccagctattggagcttacatagctgatgcttatctcggtcgatattggacctttgttatatcatcaggcatttactttctggt |
130 |
Q |
| |
|
|||||||| |||| |||||| |||||| ||||||||||| || || ||||| || ||||||||||||||||| ||||| | |||||||| ||| |||| |
|
|
| T |
39252532 |
gtacagttgagatcgtgccagttattggggcttacatagccgacgcctatcttggccgatattggacctttgtcgtatcaactggcatttattttttggt |
39252433 |
T |
|
| Q |
131 |
aagatattcaactccaaggttttgaattt |
159 |
Q |
| |
|
||||||||||| || ||| |||||||||| |
|
|
| T |
39252432 |
aagatattcaattctaagattttgaattt |
39252404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 39217833 - 39217769
Alignment:
| Q |
57 |
ggagcttacatagctgatgcttatctcggtcgatattggacctttgttatatcatcaggcattta |
121 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| |||||||||||||| || ||||| ||||||| |
|
|
| T |
39217833 |
ggagcttacatagccgatgcttatttcggtcgctattggacctttgtaattgcatcatgcattta |
39217769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 540 - 631
Target Start/End: Complemental strand, 39239911 - 39239820
Alignment:
| Q |
540 |
ggtattttcttctttgctttgtacatcattgcagcaggcacagggggaactaagcccaacatttccaccattggagcagaccaatttgatga |
631 |
Q |
| |
|
|||||||||||| |||| |||||||| |||| ||||||||| ||||| || ||||||||||| || || ||||| |||||||||||||| |
|
|
| T |
39239911 |
ggtattttcttccttgccttgtacataattgttttaggcacaggtggaaccaaacccaacatttctactatgggagctgaccaatttgatga |
39239820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 39258044 - 39257961
Alignment:
| Q |
20 |
caattgggtcggtacagtttggatcatgccagctattggagcttacatagctgatgcttatctcggtcgatattggacctttgt |
103 |
Q |
| |
|
|||||||| ||| |||||||||| |||||| | | ||||||||| |||||||||| ||||| |||||||| ||||||||||| |
|
|
| T |
39258044 |
caattgggcgggttcagtttggatgatgccacttgtaggagcttacgtagctgatgcatatcttggtcgatactggacctttgt |
39257961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 39240431 - 39240366
Alignment:
| Q |
57 |
ggagcttacatagctgatgcttatctcggtcgatattggacctttgttatatcatcaggcatttac |
122 |
Q |
| |
|
|||||||| |||||||||||||||| || ||||||||||||||||| || ||||| |||||||| |
|
|
| T |
39240431 |
ggagcttatgtagctgatgcttatcttggccgatattggacctttgtaattgcatcatgcatttac |
39240366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 579 - 648
Target Start/End: Original strand, 15765096 - 15765165
Alignment:
| Q |
579 |
acagggggaactaagcccaacatttccaccattggagcagaccaatttgatgagttcgagcctaaagaaa |
648 |
Q |
| |
|
||||| ||||| || |||||||||||||||||||| || |||||||||||||| || || |||||||||| |
|
|
| T |
15765096 |
acaggtggaaccaaacccaacatttccaccattggtgctgaccaatttgatgattttgaccctaaagaaa |
15765165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 579 - 686
Target Start/End: Complemental strand, 33413113 - 33413006
Alignment:
| Q |
579 |
acagggggaactaagcccaacatttccaccattggagcagaccaatttgatgagttcgagcctaaagaaaggtcccaaaaactttccttctacaattggt |
678 |
Q |
| |
|
||||| ||||| || |||||||| || |||||||| ||||||||||||||||| || | |||||||||| || || |||||||| || | |||||||| |
|
|
| T |
33413113 |
acaggtggaaccaaacccaacatctcaaccattggtgcagaccaatttgatgattttcatcctaaagaaaaatcacataaactttcatttttcaattggt |
33413014 |
T |
|
| Q |
679 |
gggtgttt |
686 |
Q |
| |
|
|| ||||| |
|
|
| T |
33413013 |
ggatgttt |
33413006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University