View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_low_10 (Length: 567)
Name: NF3055_low_10
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 230 - 542
Target Start/End: Original strand, 52851999 - 52852296
Alignment:
| Q |
230 |
gaactaatatcttattacaaaagaatagggaagtttcttggattacaatgttgcagtccaactcaatcaaaatgcaagctacctccctctaatcccttcc |
329 |
Q |
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| T |
52851999 |
gaactaatatcttattacaaaaaaatagggaagtttcttggattacaatgttgcagtcaaactcaatcaaaatgcaagctacct-------------tcc |
52852085 |
T |
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| Q |
330 |
tatggggataccaattttaaaataacaatatgtcaatatccattacagttttataagctaaaatcatttgaaaagaaagaagnnnnnnnctaaaattttt |
429 |
Q |
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| T |
52852086 |
tatggggataccaattttaaaataacagtatgtcaatatccattacagttttataagctaaaatcatttgaaaagaaagaa--aaaaaactaaaattttt |
52852183 |
T |
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| Q |
430 |
ggcaaccttaaaatattcattcatattcctcaaggacaacatcctcacacgcagtatccgccataggttattgatatgatgttaatactccaagacttta |
529 |
Q |
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| T |
52852184 |
ggcaaccttaaaatattcattcatattcctcaaggacaacatcctcacacgcagtatccgccataggttattgatatgatgttaatactccaagacttta |
52852283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 52851748 - 52851980
Alignment:
| Q |
1 |
aaaccatgaagtaaaagaacaaaaattacaaaaagatataactatggcattcatctcacagaaaggaagctgtttggatcgatattgttgccacaccatc |
100 |
Q |
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| T |
52851748 |
aaaccatgaagtaaaagaacaaaaattacaaaaagatataactatggcattcatctcacagaaaggaagctgtt-ggatcgatattgttgccacaccatc |
52851846 |
T |
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| Q |
101 |
catgataaaatacgcttgagcaaattcaaaataataatgaaaatacataaatcatatgatacatatgacacatcacttgctgactttggttgctaattta |
200 |
Q |
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| T |
52851847 |
catgataaaatacgcttgagcaaattcaaaataataatgaaaatacataaatcatatgatacatatgacacatcacttgctgactttggttgctaattta |
52851946 |
T |
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| Q |
201 |
ttttcataaccctttctttatttccacgtgaact |
234 |
Q |
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| T |
52851947 |
ttttcataaccctttctttatttccacgtgaact |
52851980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 284
Target Start/End: Original strand, 30186929 - 30186976
Alignment:
| Q |
237 |
tatcttattacaaaagaatagggaagtttcttggattacaatgttgca |
284 |
Q |
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| T |
30186929 |
tatcttattacaaaagaatagggaacattcctagattacaatgttgca |
30186976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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