View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_low_11 (Length: 565)
Name: NF3055_low_11
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 469; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 548
Target Start/End: Original strand, 47314602 - 47315131
Alignment:
| Q |
1 |
gcttgtaacagcggttaaagttgcatttcaaaataagagggaaaagtacggtgaaaatttctgaaactcctagttgattaccatgccaaaagaattgatt |
100 |
Q |
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| T |
47314602 |
gcttgtaacagcggttaaagttgcatttcaaaataagagggaaaagtatggtgaaaattcctgaaactcctagttaattaccatgccaaaagaattgatt |
47314701 |
T |
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| Q |
101 |
tacttttgggactcaacactttcttgccaccgggacacaaaatctcatttccattgggtggtgacggattgaaactgtctaagaaaacaaaattgttgca |
200 |
Q |
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| T |
47314702 |
tacttttgggactcaacactttcttgccaccgggacacaaaatctcatttccattgggtggtgacggattgaaactgtctaagaaaacaaaattgttgca |
47314801 |
T |
|
| Q |
201 |
tactatgaataagtttaatcaaaggtatagtgtttttaacaatcatggataattcttccacgtagtgtttttatttatgtactatgagagcatttttcaa |
300 |
Q |
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| T |
47314802 |
tactatgaataagtttaatcaaaggtatagtgtttttaacaatcgtggataattcttccacgtagtgtttttatttatgtactatgagagcatttttgaa |
47314901 |
T |
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| Q |
301 |
agtgttcatggtttatgggggtataggatgttatgggtacggatcaacccacaaacccgctcacccaaaccaacccacattttaaccaaacacaatcaac |
400 |
Q |
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| T |
47314902 |
agtgttcatggt------------------ttatgggtacggatcaacccacaaacccgctcacccaaaccaacccacattttaaccaaacacaatcaac |
47314983 |
T |
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| Q |
401 |
tcattcaaactcaatatgtttggtttggatggtggatttgccattttgaacccgcaaagttaatatgttgatatgccatattgtttttatttttatttat |
500 |
Q |
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| T |
47314984 |
tcattcaaactcaatatgtttggtttggatggtggatttgccattttgaacccgcaaagttaatatgttgatatgccatattgtttttatttttatttat |
47315083 |
T |
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| Q |
501 |
aaattgtctagcacattcttgaccataaatctatttctttattatagt |
548 |
Q |
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| T |
47315084 |
aaattgtctagcacattcttgaccataaatctatttctttattatagt |
47315131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 97 - 164
Target Start/End: Original strand, 47319963 - 47320030
Alignment:
| Q |
97 |
gatttacttttgggactcaacactttcttgccaccgggacacaaaatctcatttccattgggtggtga |
164 |
Q |
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| T |
47319963 |
gatttacttttgggactcaacacttggttgccagagggacacaaaatctcacttccattggatggtga |
47320030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 47319824 - 47319914
Alignment:
| Q |
7 |
aacagcggttaaagttgcatttcaaaataagagggaaaagtacggtgaaaatttctgaaactcctagttgattaccatgccaaaagaattgat |
99 |
Q |
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| T |
47319824 |
aacagcagttaaagttgcatttccatataagatggaaaagtatgatgaa--ttcttgaaactcgtagttgattacaatgccaaaagaattgat |
47319914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 47316499 - 47316565
Alignment:
| Q |
98 |
atttacttttgggactcaacactttcttgccaccgggacacaaaatctcatttccattgggtggtga |
164 |
Q |
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| T |
47316499 |
atttactttcaggattcaacaccttcttgccagagggacacaaaatctcactttcattggatggtga |
47316565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 47316412 - 47316449
Alignment:
| Q |
62 |
tgaaactcctagttgattaccatgccaaaagaattgat |
99 |
Q |
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| T |
47316412 |
tgaaactcctagctgattaccaagccaaaagaattgat |
47316449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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