View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_low_12 (Length: 560)
Name: NF3055_low_12
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Complemental strand, 5041069 - 5040527
Alignment:
| Q |
1 |
cctgttgaaggtggatttagacttatcactgataaaccaccaaaatgcaagaaaccaagatgtgataagggaccttgttcaactaatattgattttcaac |
100 |
Q |
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| T |
5041069 |
cctgttgaaggtggttttagacttatcactgataaaccaccaaaatgcaagaaaccaagatgtgataagggaccttgttcaactaatattaattttcaac |
5040970 |
T |
|
| Q |
101 |
aaccaaattcatcatcaatgtgctgttcttcttcaattgaagaagctgatccagaagcaatagcacaaatgaaggaaatgatgtatagagcagcagcatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5040969 |
aaccaaattcatcatcaatgtgctgttcttcttcaattgaagaagctgatccagaagcaatagcacaaatgaaggaaatgatgtatagagcagcagcatt |
5040870 |
T |
|
| Q |
201 |
tagaccagtgaattttggaatggatgatattgatgtaattgnnnnnnngcctaagaggaagaatgtaaagatatcaaatgatccacaaactgttgctgca |
300 |
Q |
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| T |
5040869 |
tagaccagtgaattttggaatggatgatattgatgtaattgaaaaaaagccgaagaggaagaatgtaaagatatcaaatgatcctcaaactgttgctgca |
5040770 |
T |
|
| Q |
301 |
agacatagaagggaaagaataggtgaaagaattagggttttgcaaaagattgtacctggtggaagcaaaatggacactgcttcaatgcttgatgaagctg |
400 |
Q |
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| T |
5040769 |
aggcatagaagagaaagaataagtgaaagaattagggttttgcaaaagattgtacctggtggaagcaaaatggacactgcttcaatgcttgatgaagctg |
5040670 |
T |
|
| Q |
401 |
caaattatctcaagtttttaaggtcacaggttaaggcacttgaaaatttaggtaacaaagttaatgctatggattgtaatccaactagtattgctttctc |
500 |
Q |
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| T |
5040669 |
caaattatctcaagtttttaaggtcacaggttaaggcacttgaaaatttaggtaacaaagttaatgctatggattgtaatccaactagtattgctttctc |
5040570 |
T |
|
| Q |
501 |
ttttaacccttcttttcccatgcaaatgatccctagtaatcac |
543 |
Q |
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| T |
5040569 |
ttttaacccttcttttcccatgcaaatgatccctagtaatcac |
5040527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 137 - 417
Target Start/End: Complemental strand, 43187247 - 43186976
Alignment:
| Q |
137 |
ttgaagaagctgatccagaagcaatagcacaaatgaaggaaatgatgtatagagcagcagcatttagaccagtga---attttggaatggatgatattga |
233 |
Q |
| |
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||||||| |||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| || |||| |||| || |||| | ||| |
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| T |
43187247 |
ttgaagagcctgatccagaggcaatagcacaaatgaaggaaatgatatatagagctgcagcatttaggccggtgacgaatttgggtttggaag----tga |
43187152 |
T |
|
| Q |
234 |
tgtaattgnnnnnnngcctaagaggaagaatgtaaagatatcaaatgatccacaaactgttgctgcaagacatagaagggaaagaataggtgaaagaatt |
333 |
Q |
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|| || |||||| ||||||||||| ||||||||||| |||||||||||||| || || || || ||||||||||||||| ||||||| ||| |
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| T |
43187151 |
tggaa--------aagcctaaaaggaagaatgttaagatatcaaaggatccacaaactgtggcggctaggcaaagaagggaaagaataagtgaaaggatt |
43187060 |
T |
|
| Q |
334 |
agggttttgcaaaagattgtacctggtggaagcaaaatggacactgcttcaatgcttgatgaagctgcaaattatctcaagttt |
417 |
Q |
| |
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|| || ||||| |||||||| |||||||||| ||| ||||||||||| |||||||||||||||||||| ||||| ||||||||| |
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| T |
43187059 |
agagtcttgcagaagattgttcctggtggaaccaagatggacactgcatcaatgcttgatgaagctgctaattacctcaagttt |
43186976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 253 - 398
Target Start/End: Original strand, 6259553 - 6259698
Alignment:
| Q |
253 |
aagaggaagaatgtaaagatatcaaatgatccacaaactgttgctgcaagacatagaagggaaagaataggtgaaagaattagggttttgcaaaagatt- |
351 |
Q |
| |
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||||| |||||||| ||||| ||||| |||||||||| ||| || |||||||||||||| |||||||| |||||||||| ||| | || | ||||||| |
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| T |
6259553 |
aagagaaagaatgtgaagatttcaaaggatccacaaagtgtagcagcaagacatagaagagaaagaattagtgaaagaataaggatattac-aaagatta |
6259651 |
T |
|
| Q |
352 |
gtacctggtggaagcaaaatggacactgcttcaatgcttgatgaagc |
398 |
Q |
| |
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||||||||||||| ||||||||||||||||| ||| | |||||||| |
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| T |
6259652 |
gtacctggtggaacaaaaatggacactgcttctatgttagatgaagc |
6259698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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