View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3055_low_13 (Length: 547)
Name: NF3055_low_13
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 534
Target Start/End: Original strand, 44155087 - 44155591
Alignment:
| Q |
18 |
attgtgagagatccgttgaattccttacacttgtgaattaatttggtgtttctttgattctctcatttaaatatgcatacaggcatgagtgttaatatta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44155087 |
attgtgagagatccgttgaattccttacacttgtgaattaatttggtgtttctttgattctctcatttaaatatgcatacaggcatgagtgttaatatta |
44155186 |
T |
|
| Q |
118 |
attctatcgaatcttgtgctacaagtcatgttgcaattaacactaaaaatgaatgaagtgattgtagagaatcgagtgatgcaggcttctatgaaaattt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44155187 |
attctatcgaatcttgtgctacaagtcatgttgagattaacactaaaaatgaatgaagtgattgtagagaatcgagtgatgcaggcttctatgaaaattt |
44155286 |
T |
|
| Q |
218 |
aatttccaaaataatcctttactcaataagtttacgttgttatttgtttcaatgttatatatctagcaagaataactatcgctgcattaagtgtttatgc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44155287 |
aatttccaaaataatcctttactcaataagtttacggtgttatttgtttcaatgttatacatctagcaagaataactatcgctgcattaagtgtttatgc |
44155386 |
T |
|
| Q |
318 |
ttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggagcagagtttttctattgaagc |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
44155387 |
ttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggagcagagtt------------c |
44155474 |
T |
|
| Q |
418 |
cagtcaagttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagttttttgaaaagaatgcgatcatcaga |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44155475 |
cagtcaagttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagttttttgaaaagaatgcgatcatcaga |
44155574 |
T |
|
| Q |
518 |
taagtgcagttcatctc |
534 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
44155575 |
taagtgcagtttatctc |
44155591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 298 - 426
Target Start/End: Complemental strand, 40894457 - 40894330
Alignment:
| Q |
298 |
gctgcattaagtgtttatgcttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggag |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
40894457 |
gctgcattaagtgtttatgcttttatgtggccaatatttctagtcatgcttcttaatagttttactctca--ctgatttgcaggtgcctggaggaaggag |
40894360 |
T |
|
| Q |
398 |
caga-gtttttctattgaagccagtcaagt |
426 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |
|
|
| T |
40894359 |
cagaggtttttctattgaagccagtcaagt |
40894330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 313 - 518
Target Start/End: Original strand, 44214434 - 44214638
Alignment:
| Q |
313 |
tatgcttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggagcagagt-ttttctat |
411 |
Q |
| |
|
|||||| ||| |||||| |||| || |||||||||||||||||||||| | ||||| |||||||||||| ||||||||||||||||| |||| | | |
|
|
| T |
44214434 |
tatgctattaggtggccagtatatcctgtcctgcttcttaatagttttattttcacta--atttgcaggtgtttggaggaaggagcagaggattttttgt |
44214531 |
T |
|
| Q |
412 |
tgaagccagtcaagttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagttttttgaaaagaatgcgatc |
511 |
Q |
| |
|
| ||||||||||| ||||||| ||| | || ||||||| ||||||||||||||||||||||| | ||| ||| || ||| | | |||||||||||||| |
|
|
| T |
44214532 |
taaagccagtcaaattgtcagatgtaagacgcctgaaagatttcatcatgagaggtgaagtgaaggatggcgagaaatgttctctcaaaagaatgcgatc |
44214631 |
T |
|
| Q |
512 |
atcagat |
518 |
Q |
| |
|
||||||| |
|
|
| T |
44214632 |
atcagat |
44214638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 492
Target Start/End: Complemental strand, 40894326 - 40894279
Alignment:
| Q |
445 |
tgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagtt |
492 |
Q |
| |
|
||||||| |||||||||||||||||||| |||| ||||||| |||||| |
|
|
| T |
40894326 |
tgaaagatttcatcatgagaggtgaagtaaaagatggtgagaaaagtt |
40894279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University