View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_low_15 (Length: 499)
Name: NF3055_low_15
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 11 - 480
Target Start/End: Complemental strand, 45280957 - 45280490
Alignment:
| Q |
11 |
cacagatcagatctcgcattacgtagtgattgaatttgaaacatcaccattttttcaatagtttttaaccatatatattgctttaaatttaaggcaagtt |
110 |
Q |
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| T |
45280957 |
cacagatcagatctcgcattacgtagtgattgaatttgaaacatcaccattttttcaatagtttttaaccatatat--tgctttaaatttaaggcaagtt |
45280860 |
T |
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| Q |
111 |
atacaactaaccataagtacatcacattaaatcattaaaggttacctaacaatcgccctagatccaaaagatgtagtataccacacaccatttgtggaga |
210 |
Q |
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| T |
45280859 |
atacaactaaccataagtacatcacattaaatcattaaaggttacctaacaatcgccctagatccaaaagatgtagtataccacacaccatttgtggaaa |
45280760 |
T |
|
| Q |
211 |
ttggtctgtatatgccattttttcatcatgatgaataagtgttctgttctgccattttagactcaaaatccaaatcaacgtgagaaattatatccttcca |
310 |
Q |
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| T |
45280759 |
ttggtctgtatatgccattttttcatcatgatgaataagtgttctgttctgccattttagactcaaaatccaaatcaacgtgagaaattatatccttcca |
45280660 |
T |
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| Q |
311 |
tgtacagtgtcactttctagtttccatttattgtttaatttttgttggagtttatatttgaaagacttcaccatgcagcgtacgtcctgatttgttatgc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45280659 |
tgtacagtgtcactttctagtttccatttattgtttaatttttgttggagtttatatttgaaagtcttcaccatgcagcgtacgtcctgatttgttatgc |
45280560 |
T |
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| Q |
411 |
agcgtacgttctgagatatctcctttaccatccaagatagtgacactctaagcctctaaagtgtttttaa |
480 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45280559 |
agcgtacgttctgagatatctcctttaccatccaagatagtgacactctaagcctctaaagtgtttttaa |
45280490 |
T |
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