View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3055_low_17 (Length: 446)
Name: NF3055_low_17
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_low_17 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 4 - 427
Target Start/End: Complemental strand, 30760051 - 30759628
Alignment:
| Q |
4 |
tttggtgcaccttggagagagagttctcacaagcgtccaaagttatgatcatctagggtgtatcttggctcaggactttactttgagtttcatatcaaat |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30760051 |
tttggtgcaccttggagagagagttctcacaagcgtccaaagttatgatcatctagggtgtatcttggctcaggactttactttgagtttcatatcaaat |
30759952 |
T |
|
| Q |
104 |
taatcatttgtaattgaaactactctaatttaatacccataagtgaagattgcaataggaagataaaaaggaacaactacttgcaacgtcaggtcttaca |
203 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30759951 |
taatcatttgtaactgaaactactctaatttattacccataagtgaagatttcaataggaagataaaaaggaacaactacttgcaatgtcaggtcttaca |
30759852 |
T |
|
| Q |
204 |
accaaaataccctcaaacttttggcatatcgacagtggtgccacacaccacatgacttatgatcgaaactttttcaaagagctcaacaaaactgctattt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30759851 |
accaaaataccctcaaacttttggcatatcgacagtggtgccacacaccacatgacttatgatcgaaactttttcaaagagctcaacaaaactgctattt |
30759752 |
T |
|
| Q |
304 |
cttataactttatagttgcgaatggagcacctattgaggtagaaggcatcggaacaattacaattagaaatcgctcaggtttgaaactaattttgaatgt |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30759751 |
cttataactttatagttgcgaatggagcacctattgaggtagaaggcattggaacaattacaattagaaatcactcaggtttgaaactaattttgaatgt |
30759652 |
T |
|
| Q |
404 |
tttatatgttccaaatcttacttc |
427 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
30759651 |
tttatatgttcccaatcttacttc |
30759628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 157 - 427
Target Start/End: Complemental strand, 30749643 - 30749373
Alignment:
| Q |
157 |
aataggaagataaaaaggaacaactacttgcaacgtcaggtcttacaaccaaaataccctcaaacttttggcatatcgacagtggtgccacacaccacat |
256 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30749643 |
aataggaagagaaaaaggaacaactacttgcaatgtcaggtcttacaaccaaaataccctcaaacttttggtatatcgacagtggtgccacacaccacat |
30749544 |
T |
|
| Q |
257 |
gacttatgatcgaaactttttcaaagagctcaacaaaactgctatttcttataactttatagttgcgaatggagcacctattgaggtagaaggcatcgga |
356 |
Q |
| |
|
|||||||||||||| | ||||||||||||| ||||||||| |||||||| |||| ||||||||| |||||||||||| ||||||||||||||| | ||| |
|
|
| T |
30749543 |
gacttatgatcgaagccttttcaaagagcttaacaaaactattatttcttgtaacattatagttgggaatggagcacccattgaggtagaaggctttgga |
30749444 |
T |
|
| Q |
357 |
acaattacaattagaaatcgctcaggtttgaaactaattttgaatgttttatatgttccaaatcttacttc |
427 |
Q |
| |
|
||| ||||||||| | ||| |||||||||||||||||||||||||||||| |||||||| || |||||||| |
|
|
| T |
30749443 |
acagttacaattaaacatcactcaggtttgaaactaattttgaatgttttttatgttcccaaacttacttc |
30749373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 30749791 - 30749733
Alignment:
| Q |
4 |
tttggtgcaccttggagagagagttctcacaagcgtccaaagttatgatcatctagggtgt |
64 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30749791 |
tttggtgcaccttggagagag--ttctcacaagcgttcaaagttatgatcatctagggtgt |
30749733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 65 - 132
Target Start/End: Complemental strand, 30749708 - 30749641
Alignment:
| Q |
65 |
atcttggctcaggactttactttgagtttcatatcaaattaatcatttgtaattgaaactactctaat |
132 |
Q |
| |
|
||||||||| |||| ||||||||||||| |||| ||||||||| |||||||| ||||||||||||||| |
|
|
| T |
30749708 |
atcttggcttaggaatttactttgagttgcataacaaattaataatttgtaactgaaactactctaat |
30749641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 415
Target Start/End: Original strand, 19931172 - 19931270
Alignment:
| Q |
317 |
agttgcgaatggagcacctattgaggtagaaggcatcggaacaattacaattagaaatcgctcaggtttgaaactaattttgaatgttttatatgttcc |
415 |
Q |
| |
|
|||||||||||||||| |||| | ||||||||| |||||| || | ||| |||| |||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
19931172 |
agttgcgaatggagcaaatattacagcagaaggcattggaacagttgtatttaagaatcactcaggttcgaaactagttttgaatgttttatatgttcc |
19931270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 415
Target Start/End: Original strand, 28402216 - 28402314
Alignment:
| Q |
317 |
agttgcgaatggagcacctattgaggtagaaggcatcggaacaattacaattagaaatcgctcaggtttgaaactaattttgaatgttttatatgttcc |
415 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||| |||||| || | ||| |||| |||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
28402216 |
agttgcgaatggagcaaaaattacagtagaaggcattggaacagttgtatttaagaatcactcaggttcgaaactagttttgaatgttttatatgttcc |
28402314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 304
Target Start/End: Original strand, 32531346 - 32531480
Alignment:
| Q |
170 |
aaaggaacaactacttgcaacgtcaggtcttacaaccaaaataccctcaaacttttggcatatcgacagtggtgccacacaccacatgacttatgatcga |
269 |
Q |
| |
|
|||||||||||||||||||| |||| | || |||| || ||| ||||| | ||||| |||||||| ||| || ||||| |||||| |||||||| |
|
|
| T |
32531346 |
aaaggaacaactacttgcaatgtcaacttttgcaacaaagcaaccttcaaaatattggctcatcgacagcggttgtacgcaccatatgactcatgatcga |
32531445 |
T |
|
| Q |
270 |
aactttttcaaagagctcaacaaaactgctatttc |
304 |
Q |
| |
|
|||| ||||||||||||||||||| | ||||||| |
|
|
| T |
32531446 |
gacttattcaaagagctcaacaaaagtactatttc |
32531480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 1608070 - 1608023
Alignment:
| Q |
22 |
gagagttctcacaagcgtccaaagttatgatcatctagggtgtatctt |
69 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || ||||||||| |||| |
|
|
| T |
1608070 |
gagagttctcgcaagcgtccaaagttatgaccagctagggtgtgtctt |
1608023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 20536685 - 20536638
Alignment:
| Q |
22 |
gagagttctcacaagcgtccaaagttatgatcatctagggtgtatctt |
69 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || ||||||||| |||| |
|
|
| T |
20536685 |
gagagttctcgcaagcgtccaaagttatgaccaactagggtgtgtctt |
20536638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University