View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_low_18 (Length: 444)
Name: NF3055_low_18
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 26 - 235
Target Start/End: Complemental strand, 24982638 - 24982431
Alignment:
| Q |
26 |
ttcagcttattttcattatctctttaacacaaattaagaaactagagtatacataagtgcttatcatgataaacacttatcaaacaagctacaaactaag |
125 |
Q |
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||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24982638 |
ttcagcttattttcattatctct--aacacaaattaagacactagattatacataagtgcttatcatgatgaacacttatcaaacaagctacaaactaag |
24982541 |
T |
|
| Q |
126 |
ctattagataagtgcttaaataatcagcagaatctttctcctaaacttgtggatcaaatacctaaactatagaccacagaattttaattaaaatgatttt |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24982540 |
ctattagataagtgcttaaataatcagcagaatctttctcctaaacttgtggatcaaatacctaaactatagaccacagaattttaattaaaatgatttt |
24982441 |
T |
|
| Q |
226 |
ctataagatt |
235 |
Q |
| |
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|||||||||| |
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| T |
24982440 |
ctataagatt |
24982431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 263 - 444
Target Start/End: Complemental strand, 24982402 - 24982221
Alignment:
| Q |
263 |
gtagaatcataattcaccagaaaatattaaagaacagtttaattcattagattcaaatcttgttgaaacttacaaaggaacaatccaaataagcatatta |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24982402 |
gtagaatcataattcaccagaaaatattaaagaacagtttaattcattagattcaaatcttgttgaaacttacaaaggaacaatccaaataagcatttta |
24982303 |
T |
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| Q |
363 |
aagaacaatcacatgttcaaattacacagttaaagcataaaacagaatatagtgttacttcttcttcaaccaccgaaaccat |
444 |
Q |
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| T |
24982302 |
aagaacaatcacatgttcaaattacacagttaaagcataaaacagaatatagtgttacttcttcttcaaccaccgaaaccat |
24982221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 305 - 396
Target Start/End: Original strand, 24497120 - 24497211
Alignment:
| Q |
305 |
ttcattagattcaaatcttgttgaaacttacaaaggaacaatccaaataagcatattaaagaacaatcacatgttcaaattacacagttaaa |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||| ||| ||| ||||||| |
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| T |
24497120 |
ttcattagattcaaatcttgttgaaacttacaaaggaacaatctaaataagcattttaaagaacaattacatgttctaataacaaagttaaa |
24497211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 21584176 - 21584208
Alignment:
| Q |
73 |
tatacataagtgcttatcatgataaacacttat |
105 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
21584176 |
tatagataagtgcttatcatgataaacacttat |
21584208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 26520352 - 26520384
Alignment:
| Q |
73 |
tatacataagtgcttatcatgataaacacttat |
105 |
Q |
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|
||||||||||||||||||||||||||||||||| |
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|
| T |
26520352 |
tatacataagtgcttatcatgataaacacttat |
26520384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 2987136 - 2987104
Alignment:
| Q |
73 |
tatacataagtgcttatcatgataaacacttat |
105 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
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|
| T |
2987136 |
tataaataagtgcttatcatgataaacacttat |
2987104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 103
Target Start/End: Original strand, 16938001 - 16938030
Alignment:
| Q |
74 |
atacataagtgcttatcatgataaacactt |
103 |
Q |
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|
|||||||||||||||||||||||||||||| |
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| T |
16938001 |
atacataagtgcttatcatgataaacactt |
16938030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 21568761 - 21568793
Alignment:
| Q |
73 |
tatacataagtgcttatcatgataaacacttat |
105 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
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|
| T |
21568761 |
tatacataagtgcttatcatgataagcacttat |
21568793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 105
Target Start/End: Original strand, 44777109 - 44777137
Alignment:
| Q |
77 |
cataagtgcttatcatgataaacacttat |
105 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
44777109 |
cataagtgcttatcatgataaacacttat |
44777137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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