View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_low_2 (Length: 872)
Name: NF3055_low_2
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 622; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 1 - 808
Target Start/End: Original strand, 38719164 - 38719960
Alignment:
| Q |
1 |
atactgttaaagcctccttagtgtagactgattgacgttaatttctattattttaataaaattagtggaataaacgtgtaattagtcaaagggtcaacac |
100 |
Q |
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||||||||||||||| |||||| |||| ||||| ||| || ||||||||||| |||| ||||| ||||| ||||||||||||||||||||||||||| |
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| T |
38719164 |
atactgttaaagccttcttagttctgactatttgacattagttactattattttagtaaacttagttgaatatacgtgtaattagtcaaagggtcaacac |
38719263 |
T |
|
| Q |
101 |
aaaatagcaaggtcaaaatnnnnnnngcgtaactagcaataactaaaatactacaccaatatagtaatttaatcaatcaagtaggtatattatttaacaa |
200 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
38719264 |
gaaatagcaaggtcaaaataaaaaaagagtaactagcaataactaaaatacta------tatagtaatttaatcaatcaagtaggagtattatttaacaa |
38719357 |
T |
|
| Q |
201 |
ttctgcgtaccaagtattcagctatctatactcgcatcccttcactttagcttttagttttgacaaattctcagttttaaagtgcaattcctcctaaatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38719358 |
ttctgcgtaccaagtattcagctatctatactcgcagcccttcactttatcttttagttttgacaaattctcagttttaaagtgcaattcctcctaaatc |
38719457 |
T |
|
| Q |
301 |
caacgtcaacactgaactctctctat----ataatcacatactcttacatatcatatccataacaaaattatctaagagtctaagatatatattttcaga |
396 |
Q |
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|||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38719458 |
caacgtcaacgctgaactctctctatctatataatcacatactcttacata-----tccataacaaaattatctaagagtctaagatatatattttcaga |
38719552 |
T |
|
| Q |
397 |
accatttcttactccaaagccaaaacaaagtataactgtgagtgtaacgaacatggatactaattacaaaaccaatatgcatgtaatgaggagtttttca |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38719553 |
accatttcttactccaaagccaaaacaaagtataactgtgagtgtaacaaacatggatactaattacaaaaccaatatgcatgtaatgaggagtttttca |
38719652 |
T |
|
| Q |
497 |
gattgtggttcatcagttacagatgtaagtcaagaagatagtatggtaataaagaaaggtccatggacagaagaggaggatactattctgatgaactatg |
596 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38719653 |
gattgtggttcatcagttacagatgtaagtcaagaagatactatggtaataaagaaaggtccatggacagaagaggaggatactattctgatgaactatg |
38719752 |
T |
|
| Q |
597 |
tggcggtccatggagatggtcattggaactccgtggctcgctgttcgggtctaaagagaaccgggaaaagctgcagattaagatggttgaactatttgcg |
696 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38719753 |
tggcagtccatggagatggtcattggaactccgtggctcgctgttcgggtctaaagagaaccgggaaaagctgcagattaagatggttgaactatttgcg |
38719852 |
T |
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| Q |
697 |
tccaaatgttcgacgtgggaacatcactctccaagaacaagtcttgatccttgatcttcattcccgttggggaaatcggtacgtatttatatatatgcat |
796 |
Q |
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| T |
38719853 |
tccaaatgttcgacgtgggaacatcactctccaagaacaagtcttgatccttgatcttcattcccgttggggaaatcggtacg----tatatatatgcat |
38719948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 806 - 857
Target Start/End: Original strand, 38719987 - 38720038
Alignment:
| Q |
806 |
ttttagaatgaaatagagttggtcaaattaactaacatgatattgtgttatt |
857 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38719987 |
ttttagaatgaaatagagttggtcaaattaactaacatgatattgtgttatt |
38720038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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