View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_low_22 (Length: 407)
Name: NF3055_low_22
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 5519937 - 5519710
Alignment:
| Q |
11 |
cagagagatcaacaagatctatacaaatttctgaagaagctcaaagtattgatgctgcaaaagagattggaagtctcatgtataaagactatagtcataa |
110 |
Q |
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| T |
5519937 |
cagagagatcaacaagatctatacaaatttctgaagaagctcaaagtattgatgctgcaaaagagattggaagtctcatgtataaagactatagtcataa |
5519838 |
T |
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| Q |
111 |
gggaaaaccatcccataggccacccatcaataatcaccaacctaataatccatagtgtataatatt---atttcaggttcacattcaattttgtactaag |
207 |
Q |
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| T |
5519837 |
gggaaaaccatcccataggccacccatcaataaccaccaacctaataatccatagtgtataatatttcaggttcatgatcatattcaattttgtaccaag |
5519738 |
T |
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| Q |
208 |
ttgctagcaacttatagtaatcacctag |
235 |
Q |
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| T |
5519737 |
ttgctagcaacttatagtaatcacctag |
5519710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 275 - 366
Target Start/End: Complemental strand, 5519670 - 5519579
Alignment:
| Q |
275 |
tttcttttttcatgtaccaaaaagtttgtttgtttgtttcaaaatattaaaaagagatatatgtagactgcatgcgttttcagtattgttta |
366 |
Q |
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| T |
5519670 |
tttcttttttcatgtgccaaaaagtttgtttgtttgtttccaaatattaaaaagagatatatgtagactgcatgcattttcagtattgttta |
5519579 |
T |
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