View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_low_23 (Length: 393)
Name: NF3055_low_23
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_low_23 |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 17 - 311
Target Start/End: Complemental strand, 5508440 - 5508160
Alignment:
| Q |
17 |
gtggcaaagataggaagctgaaaagagtctcaacaaagtcttttgttgcttccacaaaaacaactttgttcctttgtttgtctaccgtgattttgagggg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5508440 |
gtggcaaagataggaagctgaaaagagtctcaacaaagtcttttgttgcttccacaaaaacaactttgttgctttgtttgtctaccgtgattttgagggg |
5508341 |
T |
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| Q |
117 |
aaacgtttttgactcttcttgttgttcttgttgagaagtcatggcagcaagttgtagaactcttgttgtttttagctcttcaatgcccacttttttagaa |
216 |
Q |
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| T |
5508340 |
aaacgtttttgactcttcttgttgttcttgttgagaagtcatggcagcaagttgtagaactcttgttgtttttagctcttcaatgc-------------- |
5508255 |
T |
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| Q |
217 |
cacttaaatggaacccttgttcaatgccctaaacccctaaatggaataagaacaaacaatggatataaatatgtatgcataaggaaatattaatt |
311 |
Q |
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| T |
5508254 |
cacttaagtggaacccttgttcaatgccctaaacccctaattggaataaaaacaaacaatggatataaatatgtatgcataagcaaatattaatt |
5508160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 5437545 - 5437654
Alignment:
| Q |
24 |
agataggaagctgaaaagagtctcaacaaagtcttttgttgcttccacaaaaacaactttgttcctttgtttgtctaccgtgattttgaggggaaacgtt |
123 |
Q |
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||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||| | ||||||||||| || ||||||||||||| || | |
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| T |
5437545 |
agataggaagctgaatagagtgtcaacaaaatcttttgttgcttccacaaaaacaactttgcttctttgtttgtccactaatattttgaggggaatcgat |
5437644 |
T |
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| Q |
124 |
tttgactctt |
133 |
Q |
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| T |
5437645 |
tttgactctt |
5437654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 5458843 - 5458917
Alignment:
| Q |
24 |
agataggaagctgaaaagagtctcaacaaagtcttttgttgcttccacaaaaacaactttgttcctttgtttgtc |
98 |
Q |
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| T |
5458843 |
agataggaagctgaagatagtgtcaacaaagtcctttgttgcttccacaaaaacaactttgtttctttgtttgtc |
5458917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 24 - 137
Target Start/End: Original strand, 5447779 - 5447892
Alignment:
| Q |
24 |
agataggaagctgaaaagagtctcaacaaagtcttttgttgcttccacaaaaacaactttgttcctttgtttgtctaccgtgattttgaggggaaacgtt |
123 |
Q |
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| T |
5447779 |
agataggaagctgaaaagagtgtcaacaaagtccttttttgcttccacaaatacaactttgttgctttgtttatgcaccaagattttgacgtgaattgtt |
5447878 |
T |
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| Q |
124 |
tttgactcttcttg |
137 |
Q |
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| T |
5447879 |
cttgactcttcttg |
5447892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 5487196 - 5487122
Alignment:
| Q |
24 |
agataggaagctgaaaagagtctcaacaaagtcttttgttgcttccacaaaaacaactttgttcctttgtttgtc |
98 |
Q |
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||||||||| ||||| ||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
5487196 |
agataggaaactgaagagagtgtcaacaaaatcttttgttgcttccacgaaaacaactttgtttctttgtttgtc |
5487122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 14686 - 14612
Alignment:
| Q |
24 |
agataggaagctgaaaagagtctcaacaaagtcttttgttgcttccacaaaaacaactttgttcctttgtttgtc |
98 |
Q |
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|||||||||||||||||||||||||||| || ||||| ||||||||||||||||||| |||| ||||||||||| |
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| T |
14686 |
agataggaagctgaaaagagtctcaacatagatttttgctgcttccacaaaaacaactctgttgctttgtttgtc |
14612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 1213523 - 1213449
Alignment:
| Q |
24 |
agataggaagctgaaaagagtctcaacaaagtcttttgttgcttccacaaaaacaactttgttcctttgtttgtc |
98 |
Q |
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|||||||||||||||||||||||||||| || ||||| ||||||||||||||||||| |||| ||||||||||| |
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| T |
1213523 |
agataggaagctgaaaagagtctcaacatagatttttgctgcttccacaaaaacaactctgttgctttgtttgtc |
1213449 |
T |
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