View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_low_25 (Length: 373)
Name: NF3055_low_25
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 32814770 - 32815120
Alignment:
| Q |
1 |
tagacaactgatgagtaaagaatccgatcaacctaagttattcagcccatttgttagttttgcttcagaacaaacaaacacaaattttacatccagaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32814770 |
tagacaactgatgagtaaagaatccgatcaacctaagttattcagcccatttgttagttttgct----aacaaacaaacacaaattttacatccagaaac |
32814865 |
T |
|
| Q |
101 |
caaagcattatctacataaagcaggacacacaaatacattgaaacatcctatagctcaataactatgaaacactatcaaagacacctaacaaatgattta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32814866 |
caaagcattatctacataaagcaggacacacaaatacattgaaacatcctatagctcaataactatgaaacactatcaaagacacctaacaaatgattta |
32814965 |
T |
|
| Q |
201 |
agatcatgtcaaacaccgatgtattggacattgaacacaccttcaatctaaagtacatagctcaataacacataatatgaaaccacaacgaattgaaagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32814966 |
agatcatgtcaaacaccgatgtattggacattgaacacaccttcaatctaaagtacatagctcaataacacataatatgaaaccacaacgaattgaaagt |
32815065 |
T |
|
| Q |
301 |
atttgaattatcttttgaacttctatctgtctatactataaatcaaaccactttg |
355 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32815066 |
atttgcattatcttttgaacttctatctgtctatactataaatcaaaccactttg |
32815120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 7986458 - 7986393
Alignment:
| Q |
1 |
tagacaactgatgagtaaagaatccgatcaacctaagttattcagcccatttgttagttttgcttc |
66 |
Q |
| |
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|||||||| |||||||||||||| ||||||||||||| |||| ||||||| ||||||| |||||| |
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| T |
7986458 |
tagacaaccgatgagtaaagaatacgatcaacctaaggtatttagcccatgagttagttatgcttc |
7986393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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