View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_low_26 (Length: 373)
Name: NF3055_low_26
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 15 - 369
Target Start/End: Complemental strand, 49269825 - 49269471
Alignment:
| Q |
15 |
agttgaagcttatgcattatcaatctctatataaagaataatgtaattaacttagaaaaacacaaaacaaacatcataagccacaaacaactagagaaac |
114 |
Q |
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| T |
49269825 |
agttgaagcttatgcattatcaatctctatataaagaataatgtaattaacttagaaaaacacaaaacaaacatcataagccacaaacaactagagaaac |
49269726 |
T |
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| Q |
115 |
aatgaaattcattcaactatgtttcctaatttctctcttggtgttgctcaacacaaaggcactacaaggagctaaaccagagagagtagtagacagacac |
214 |
Q |
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| T |
49269725 |
aatgaaattcattcaactatgtttcctaatttctctcttggtgctgctcaacacaaaggcactacaaggagctaaaccagatagagtagtagacagacac |
49269626 |
T |
|
| Q |
215 |
ggtaagcctcttgagtcaggaaaaggttactatgtatggcaattttgggctcatgatattggaggcttaacattgggctcaacaagaaacaaaacatgtc |
314 |
Q |
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| T |
49269625 |
ggtaagcctcttgagtcaggaaaaggttactatgtatggcaattttgggctcatgatattggaggcttaacattgagctcaacaagaaacaaaacatgtc |
49269526 |
T |
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| Q |
315 |
ctcttgatgtaattcgtaaccctaaagaactcggctcgccagtgtacttctctgc |
369 |
Q |
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| T |
49269525 |
ctcttgatgtaattcgtaaccctaaagaactcggctcgccagtgtacttctctgc |
49269471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 109 - 337
Target Start/End: Complemental strand, 49278099 - 49277874
Alignment:
| Q |
109 |
agaaacaatgaaattcattcaactatgtttcctaatttctctcttggtgttgctcaacacaaaggcactacaaggagctaaaccagagagagtagtagac |
208 |
Q |
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| T |
49278099 |
agaaacaatgaaattcattcaactcttttgcttcctttctctctcagcgttgttcaacacaaaggcactacaaggagataaaccagaggcagtagtagac |
49278000 |
T |
|
| Q |
209 |
agacacggtaagcctcttgagtcaggaaaaggttactatgtatggcaattttgggctcatgatattggaggcttaacattgggctcaacaagaaacaaaa |
308 |
Q |
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| T |
49277999 |
aaacaaggtaaccctcttaaaccaggtgaaggttactacgtatttccactttgggc---tgacaatggaggcataacattaggacaaacaagaaacaaaa |
49277903 |
T |
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| Q |
309 |
catgtcctcttgatgtaattcgtaaccct |
337 |
Q |
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| T |
49277902 |
catgccctcttgatgttatccgtaaccct |
49277874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 109 - 337
Target Start/End: Complemental strand, 49272176 - 49271951
Alignment:
| Q |
109 |
agaaacaatgaaattcattcaactatgtttcctaatttctctcttggtgttgctcaacacaaaggcactacaaggagctaaaccagagagagtagtagac |
208 |
Q |
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|||||| ||||||||||||||||| | || | | |||||||||| || ||| ||||||||||| |||||||||||||| |||||||| |||||||||| |
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| T |
49272176 |
agaaaccatgaaattcattcaactcttttgcttcctttctctcttagttttgttcaacacaaagccactacaaggagctgaaccagaggcagtagtagac |
49272077 |
T |
|
| Q |
209 |
agacacggtaagcctcttgagtcaggaaaaggttactatgtatggcaattttgggctcatgatattggaggcttaacattgggctcaacaagaaacaaaa |
308 |
Q |
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| ||| ||||| |||||| | |||| |||||||||| |||| | | ||||||| || | ||||||| | ||||| || ||||||||||||| |
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| T |
49272076 |
aaacaaggtaaccctcttaaaccaggtgaaggttactacgtatttccactttgggc---cgacaatggaggcattacattaggacacacaagaaacaaaa |
49271980 |
T |
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| Q |
309 |
catgtcctcttgatgtaattcgtaaccct |
337 |
Q |
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|||| |||||||||||||| ||||||||| |
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| T |
49271979 |
catgccctcttgatgtaatccgtaaccct |
49271951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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