View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3055_low_30 (Length: 361)

Name: NF3055_low_30
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3055_low_30
NF3055_low_30
[»] chr5 (4 HSPs)
chr5 (9-325)||(32726163-32726487)
chr5 (113-280)||(38925969-38926133)
chr5 (25-278)||(42882424-42882662)
chr5 (113-216)||(22545234-22545337)
[»] chr1 (5 HSPs)
chr1 (25-280)||(42958044-42958285)
chr1 (113-280)||(18506629-18506796)
chr1 (113-280)||(46352408-46352572)
chr1 (136-278)||(7486767-7486909)
chr1 (25-100)||(19193333-19193408)
[»] scaffold0159 (1 HSPs)
scaffold0159 (113-280)||(36330-36497)
[»] chr2 (5 HSPs)
chr2 (113-280)||(5782867-5783034)
chr2 (25-278)||(29468105-29468343)
chr2 (25-259)||(25417548-25417768)
chr2 (27-245)||(13363959-13364162)
chr2 (25-152)||(25546578-25546705)
[»] chr6 (12 HSPs)
chr6 (118-280)||(21392709-21392871)
chr6 (25-280)||(18767105-18767345)
chr6 (113-280)||(20025192-20025359)
chr6 (25-278)||(14463960-14464198)
chr6 (182-279)||(18785316-18785413)
chr6 (25-278)||(15906447-15906685)
chr6 (136-280)||(31569849-31569993)
chr6 (113-216)||(20881416-20881519)
chr6 (113-216)||(21683708-21683811)
chr6 (113-211)||(18715817-18715914)
chr6 (26-92)||(21392883-21392949)
chr6 (27-92)||(20025366-20025431)
[»] chr7 (2 HSPs)
chr7 (113-280)||(3569042-3569206)
chr7 (136-278)||(39702502-39702644)
[»] scaffold0214 (2 HSPs)
scaffold0214 (25-263)||(22177-22405)
scaffold0214 (136-280)||(1558-1702)
[»] chr8 (4 HSPs)
chr8 (30-278)||(7964300-7964533)
chr8 (25-263)||(8224199-8224422)
chr8 (25-263)||(22932509-22932732)
chr8 (33-233)||(43974108-43974298)
[»] chr4 (3 HSPs)
chr4 (134-278)||(19111464-19111608)
chr4 (25-259)||(43592995-43593220)
chr4 (30-100)||(52374734-52374804)
[»] scaffold0041 (1 HSPs)
scaffold0041 (25-263)||(31700-31922)
[»] scaffold0054 (1 HSPs)
scaffold0054 (118-258)||(50215-50351)
[»] chr3 (1 HSPs)
chr3 (136-280)||(6506530-6506674)
[»] scaffold0557 (1 HSPs)
scaffold0557 (25-278)||(6908-7145)
[»] scaffold0590 (1 HSPs)
scaffold0590 (26-92)||(9473-9539)
[»] scaffold0726 (1 HSPs)
scaffold0726 (157-209)||(5162-5214)


Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 325
Target Start/End: Complemental strand, 32726487 - 32726163
Alignment:
Q  9 tcaaaggctaaccaatagaacaaaactttgataacacatccaagtcatacatagggcgaagacatttcaaaacgagtgaaagaaaatttacatattttaa 108  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||| ||||||||||||||    
T  32726487 tcaaaggctaacaaatagaacaaaacattgataacacatccaagtcatacatggggcgaagacatttcaaatagagtgaaagaaagtttacatattttaa 32726388  T
Q  109 tcatcacaatagtcatattacttattcatactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcata 208  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32726387 tcatcacattagtcatattacttattcatactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaataataattaaactggggcata 32726288  T
Q  209 taagtgatgttcttgtttgagaaatctttgaaaaatataaggcaa-------gagcccctgcccacaaccaccccttcc-nnnnnnncatccatgaaccc 300  Q
    ||||||||||||||||||||||||| || ||||||||||||||||        |||||| |||||||||||||||||||        |||||||||||||    
T  32726287 taagtgatgttcttgtttgagaaattttggaaaaatataaggcaaagagccccagccccagcccacaaccaccccttccttttttttcatccatgaaccc 32726188  T
Q  301 tccttccatatcctaggattaaaat 325  Q
    |||||||||||||||||||||||||    
T  32726187 tccttccatatcctaggattaaaat 32726163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 113 - 280
Target Start/End: Original strand, 38925969 - 38926133
Alignment:
Q  113 cacaatagtcatattacttattcatactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataag 212  Q
    |||| ||||||||| ||||||||||| ||||||| |||||||| ||||||||||||| |||||| | | || ||||| ||||||||||||||   |||||    
T  38925969 cacattagtcatatcacttattcataatttgcgatatttttgattgaaaaagtcaatgtaacatagtaagttgaatgttaattaaactgggg---ataag 38926065  T
Q  213 tgatgttcttgtttgagaaatctttgaaaaatataaggcaagagcccctgcccacaaccaccccttcc 280  Q
    |||||||||||||| |||||||||||| ||||| || ||||||||||||||  ||||||||| |||||    
T  38926066 tgatgttcttgttttagaaatctttgagaaataaaacgcaagagcccctgcatacaaccaccacttcc 38926133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 25 - 278
Target Start/End: Complemental strand, 42882662 - 42882424
Alignment:
Q  25 agaacaaaactttgataacacatccaagtcatacatagggcgaagacatttcaaaacgagtgaaagaaaatttacatattttaatcatcacaatagtcat 124  Q
    |||||||||||||||||||||||  | ||| | || ||| |||||||||||||||| ||||||||||| ||||||| |||              ||||||    
T  42882662 agaacaaaactttgataacacatttatgtctttcaaaggacgaagacatttcaaaaagagtgaaagaatatttacacatt--------------agtcat 42882577  T
Q  125 attacttattcatactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataagtgatgttcttgt 224  Q
    || |||| | |||||||||||| |||||||| ||||||||||||| | |||| | | |||||||| |||||||||||| |||||||| ||||||| ||||    
T  42882576 atcacttct-catactttgcgatatttttgattgaaaaagtcaatgtgacatagcaagtggaatgttaattaaactggagcatataattgatgttgttgt 42882478  T
Q  225 ttgagaaatctttgaaaaatataaggcaagagcccctgcccacaaccacccctt 278  Q
    |||| |||| || || ||||| ||||||||||| |||||  ||||| |||||||    
T  42882477 ttgataaatgttggagaaatagaaggcaagagcgcctgcatacaacgacccctt 42882424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 113 - 216
Target Start/End: Complemental strand, 22545337 - 22545234
Alignment:
Q  113 cacaatagtcatattacttattcatactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataag 212  Q
    |||| ||||||||| |||||||||||||||| || |||||||| |||||||||| || ||| || | |  ||||||| ||||||||| || |||||||||    
T  22545337 cacattagtcatatcacttattcatactttgggatatttttgattgaaaaagtcgatgtaatatagcaaatggaatgttaattaaaccggagcatataag 22545238  T
Q  213 tgat 216  Q
    ||||    
T  22545237 tgat 22545234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 5e-50; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 25 - 280
Target Start/End: Complemental strand, 42958285 - 42958044
Alignment:
Q  25 agaacaaaactttgataacacatccaagtcatacatagggcgaagacatttcaaaacgagtgaaagaaaatttacatattttaatcatcacaatagtcat 124  Q
    |||||||||||||||||||||||||||||| | || ||| |||||||||||||||| |||||||||||  |||||| |||              ||||||    
T  42958285 agaacaaaactttgataacacatccaagtcttgcaaaggacgaagacatttcaaaaagagtgaaagaatgtttacacatt--------------agtcat 42958200  T
Q  125 attacttattcatactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataagtgatgttcttgt 224  Q
    || |||||||||||| |||| | |||||| | ||| | ||||||| |||||| | | |||||||| |||||||||||||||||||| |||||||||||||    
T  42958199 atcacttattcatacattgcaatattttttattgagatagtcaatgtaacatagtaagtggaatgttaattaaactggggcatataggtgatgttcttgt 42958100  T
Q  225 ttgagaaatctttgaaaaatataaggcaagagcccctgcccacaaccaccccttcc 280  Q
    ||||||||| || || ||||| |||||||||||||||||| |||||||||||||||    
T  42958099 ttgagaaattttggagaaatagaaggcaagagcccctgcctacaaccaccccttcc 42958044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 113 - 280
Target Start/End: Original strand, 18506629 - 18506796
Alignment:
Q  113 cacaatagtcatattacttattcatactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataag 212  Q
    |||| ||||||||| ||||||||||||||||||| |||||| | ||||||||||||| |||||| | | |||||||| |||||||||||| |||||||||    
T  18506629 cacattagtcatatcacttattcatactttgcgatattttttaatgaaaaagtcaatgtaacatagcaagtggaatgttaattaaactggtgcatataag 18506728  T
Q  213 tgatgttcttgtttgagaaatctttgaaaaatataaggcaagagcccctgcccacaaccaccccttcc 280  Q
    |||||||||||||||||||||||| || ||||| |||||||||||  ||||| |||||||||||||||    
T  18506729 tgatgttcttgtttgagaaatcttggagaaataaaaggcaagagcaactgcctacaaccaccccttcc 18506796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 113 - 280
Target Start/End: Original strand, 46352408 - 46352572
Alignment:
Q  113 cacaatagtcatattacttattcatactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataag 212  Q
    |||| ||||||||| ||||||||||| |||| || |||||||| ||||||||||||| |||||| | | || ||||| |||||||| |||||   |||||    
T  46352408 cacattagtcatatcacttattcataatttgtgatatttttgattgaaaaagtcaatgtaacatagcaagttgaatgttaattaaattgggg---ataag 46352504  T
Q  213 tgatgttcttgtttgagaaatctttgaaaaatataaggcaagagcccctgcccacaaccaccccttcc 280  Q
    |||| ||||||||| |||||||||||| ||||| |||||||||||||||||  |||| |||| |||||    
T  46352505 tgatattcttgttttagaaatctttgagaaataaaaggcaagagcccctgcatacaatcaccacttcc 46352572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 136 - 278
Target Start/End: Complemental strand, 7486909 - 7486767
Alignment:
Q  136 atactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataagtgatgttcttgtttgagaaatct 235  Q
    ||||||||| | |||||||| ||||||||||||| |||||| | | |||||||| |||||||  ||||  ||||| |||||||||||||||||||||| |    
T  7486909 atactttgcaatatttttgattgaaaaagtcaatgtaacatagcaagtggaatgttaattaacttgggatatatatgtgatgttcttgtttgagaaattt 7486810  T
Q  236 ttgaaaaatataaggcaagagcccctgcccacaaccacccctt 278  Q
    | ||  |||| ||||||||||||||| || |||||||||||||    
T  7486809 tggagtaatagaaggcaagagcccctacctacaaccacccctt 7486767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 19193408 - 19193333
Alignment:
Q  25 agaacaaaactttgataacacatccaagtcatacatagggcgaagacatttcaaaacgagtgaaagaaaatttaca 100  Q
    ||||||||||||||| ||||| |||||||  | || ||| ||||||||||| |||| |||| |||||| |||||||    
T  19193408 agaacaaaactttgacaacacgtccaagttttgcaaaggacgaagacattttaaaaagagtaaaagaatatttaca 19193333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 113 - 280
Target Start/End: Complemental strand, 36497 - 36330
Alignment:
Q  113 cacaatagtcatattacttattcatactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataag 212  Q
    |||| ||||||| | ||||||||||||||||| | |||||| | ||||||||||||| |||||| | | |||||||| ||||||||||||||||||||||    
T  36497 cacattagtcatgtcacttattcatactttgcaatatttttcattgaaaaagtcaatgtaacatagcaagtggaatgttaattaaactggggcatataag 36398  T
Q  213 tgatgttcttgtttgagaaatctttgaaaaatataaggcaagagcccctgcccacaaccaccccttcc 280  Q
    |||||||||||||||||||||||| || ||||| || |||||||||||| || |||||||||||||||    
T  36397 tgatgttcttgtttgagaaatcttggagaaatagaatgcaagagcccctacctacaaccaccccttcc 36330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 113 - 280
Target Start/End: Complemental strand, 5783034 - 5782867
Alignment:
Q  113 cacaatagtcatattacttattcatactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataag 212  Q
    |||| ||||||| | ||||||||||||||||| | |||||| | ||||||||||||| |||||| | | |||||||| ||||||||||||||||||||||    
T  5783034 cacattagtcatgtcacttattcatactttgcaatatttttcattgaaaaagtcaatgtaacatagcaagtggaatgttaattaaactggggcatataag 5782935  T
Q  213 tgatgttcttgtttgagaaatctttgaaaaatataaggcaagagcccctgcccacaaccaccccttcc 280  Q
    |||||||||||||||||||||||| || ||||| || |||||||||||| || |||||||||||||||    
T  5782934 tgatgttcttgtttgagaaatcttggagaaatagaatgcaagagcccctacctacaaccaccccttcc 5782867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 25 - 278
Target Start/End: Complemental strand, 29468343 - 29468105
Alignment:
Q  25 agaacaaaactttgataacacatccaagtcatacatagggcgaagacatttcaaaacgagtgaaagaaaatttacatattttaatcatcacaatagtcat 124  Q
    |||||||||||||||||||||||  | ||| | || | | |||||||||||||||| ||||||||||| ||||||| |||              ||||||    
T  29468343 agaacaaaactttgataacacatttatgtctttcaaatgacgaagacatttcaaaaagagtgaaagaatatttacacatt--------------agtcat 29468258  T
Q  125 attacttattcatactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataagtgatgttcttgt 224  Q
    || |||| | |||||||||||| |||||||| ||||||||||||| | |||| | | |||||||| ||||||||||||||||||||| ||||||| ||||    
T  29468257 atcacttct-catactttgcgatatttttgattgaaaaagtcaatgtgacatagcaagtggaatgttaattaaactggggcatataattgatgttgttgt 29468159  T
Q  225 ttgagaaatctttgaaaaatataaggcaagagcccctgcccacaaccacccctt 278  Q
    ||||||||| || || ||||| ||||||||||| |||||  ||||| |||||||    
T  29468158 ttgagaaatgttggagaaatagaaggcaagagcgcctgcatacaacgacccctt 29468105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 25 - 259
Target Start/End: Original strand, 25417548 - 25417768
Alignment:
Q  25 agaacaaaactttgataacacatccaagtcatacatagggcgaagacatttcaaaacgagtgaaagaaaatttacatattttaatcatcacaatagtcat 124  Q
    |||||||||||||||||||||||||||||| | || ||| |||||||||||||||| ||||||||||| ||||||| |||              ||||||    
T  25417548 agaacaaaactttgataacacatccaagtcttgcaaaggacgaagacatttcaaaaagagtgaaagaatatttacacatt--------------agtcat 25417633  T
Q  125 attacttattcatactttgcgaaatttttgactgaaaaa-gtcaatctaacatggaacgtggaatgataattaaactggggcatataagtgatgttcttg 223  Q
    || |||||||||||||||| || |||||||| ||||||| ||  || |||||| | | |||||||| |||  || ||||||||||||||||||||| |||    
T  25417634 atcacttattcatactttgagatatttttgattgaaaaaagttgatgtaacatagcaagtggaatgttaaccaatctggggcatataagtgatgttattg 25417733  T
Q  224 tttgagaaatctttgaaaaatataaggcaagagccc 259  Q
    |||||||||| |||| | |||| |||||||||||||    
T  25417734 tttgagaaat-tttggagaataaaaggcaagagccc 25417768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 27 - 245
Target Start/End: Complemental strand, 13364162 - 13363959
Alignment:
Q  27 aacaaaactttgataacacatccaagtcatacatagggcgaagacatttcaaaacgagtgaaagaaaatttacatattttaatcatcacaatagtcatat 126  Q
    |||||||||||||||||||||||||||| | || ||| |||||||||||||||| |||||||| || ||||||| |||              | ||||||    
T  13364162 aacaaaactttgataacacatccaagtctttcaaaggacgaagacatttcaaaaagagtgaaaaaatatttacacatt--------------aatcatat 13364077  T
Q  127 tacttattcatactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataagtgatgttcttgttt 226  Q
     ||||||||||||||||||| |||||||| ||||||||||||| ||||||   | ||| |||| ||||| |||||||||||||||||| |||||||||||    
T  13364076 cacttattcatactttgcgatatttttgattgaaaaagtcaatgtaacataacaagtgaaatgttaatt-aactggggcatataagtggtgttcttgttt 13363978  T
Q  227 gagaaatctttgaaaaata 245  Q
    || ||||||| || |||||    
T  13363977 gacaaatcttggagaaata 13363959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 25 - 152
Target Start/End: Original strand, 25546578 - 25546705
Alignment:
Q  25 agaacaaaactttgataacacatccaagtcatacatagggcgaagacatttcaaaacgagtgaaagaaaatttacatattttaatcatcacaatagtcat 124  Q
    ||||||||||||||||| |||||| | ||| ||  |||| | ||||||| |||||  |||||||||||  |||||| ||| ||||||||||| |||||||    
T  25546578 agaacaaaactttgatagcacatcaatgtcttatgtaggacaaagacatctcaaacagagtgaaagaatgtttacacattctaatcatcacattagtcat 25546677  T
Q  125 attacttattcatactttgcgaaatttt 152  Q
    ||  ||| ||||||||||| || |||||    
T  25546678 atctcttgttcatactttgagatatttt 25546705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 118 - 280
Target Start/End: Complemental strand, 21392871 - 21392709
Alignment:
Q  118 tagtcatattacttattcatactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataagtgatg 217  Q
    ||||||| | ||||||||||||||||| | ||| || |  |||||| ||||| |||||| | | |||||||| ||||||||||||||||||||||| |||    
T  21392871 tagtcatgtcacttattcatactttgcaatattcttcatggaaaaattcaatgtaacatagcaagtggaatgttaattaaactggggcatataagttatg 21392772  T
Q  218 ttcttgtttgagaaatctttgaaaaatataaggcaagagcccctgcccacaaccaccccttcc 280  Q
    ||||||||||||||||||| || ||||| |||||||||||||||||| |||||||||||||||    
T  21392771 ttcttgtttgagaaatcttggagaaatagaaggcaagagcccctgcctacaaccaccccttcc 21392709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 25 - 280
Target Start/End: Complemental strand, 18767345 - 18767105
Alignment:
Q  25 agaacaaaactttgataacacatccaagtcatacatagggcgaagacatttcaaaacgagtgaaagaaaatttacatattttaatcatcacaatagtcat 124  Q
    ||||||||||||| ||||||||| |||||| | || ||| |||||||||||||||| |||||||||||  |||              ||||| |||||||    
T  18767345 agaacaaaactttaataacacattcaagtcttgcaaaggacgaagacatttcaaaaagagtgaaagaatgttt--------------tcacattagtcat 18767260  T
Q  125 attacttattcatactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataagtgatgttcttgt 224  Q
    || ||||||||||||||||||| |||||||| |||||| |||||| |||||| | | | |||||| |||||||||||| ||||||||||||| || ||||    
T  18767259 atcacttattcatactttgcgatatttttgattgaaaaggtcaatgtaacatagcaagaggaatgttaattaaactggagcatataagtgatattgttgt 18767160  T
Q  225 ttgagaaatctttgaaaaatataaggcaagagcccctgcccacaaccaccccttcc 280  Q
    |||||||||||| || ||||| |||| || ||||| |||| |||||||||||||||    
T  18767159 ttgagaaatcttggagaaatagaagg-aaaagcccatgcctacaaccaccccttcc 18767105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 113 - 280
Target Start/End: Complemental strand, 20025359 - 20025192
Alignment:
Q  113 cacaatagtcatattacttattcatactttgcgaaatttttg-actgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataa 211  Q
    |||| ||||||||| ||||||||||| ||||||| ||||||  | ||||||||||||| |||||| | |  | || || |||||||||||||||||||||    
T  20025359 cacattagtcatatcacttattcatagtttgcgatatttttttattgaaaaagtcaatgtaacatagcaaattgactgttaattaaactggggcatataa 20025260  T
Q  212 gtgatgttcttgtttgagaaatctttgaaaaatataaggcaagagcccctgcccacaaccaccccttcc 280  Q
    ||||| ||||||||||||||||||| || |||||||| | || ||||| |||| |||||||||||||||    
T  20025259 gtgatattcttgtttgagaaatcttggagaaatataatg-aaaagcccatgcctacaaccaccccttcc 20025192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 25 - 278
Target Start/End: Original strand, 14463960 - 14464198
Alignment:
Q  25 agaacaaaactttgataacacatccaagtcatacatagggcgaagacatttcaaaacgagtgaaagaaaatttacatattttaatcatcacaatagtcat 124  Q
    |||||||||||||||||||| ||  | ||| | || ||| |||||||||||||||| ||||||||||| ||||||| |||              ||||||    
T  14463960 agaacaaaactttgataacatatttatgtctttcaaaggacgaagacatttcaaaaagagtgaaagaatatttacacatt--------------agtcat 14464045  T
Q  125 attacttattcatactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataagtgatgttcttgt 224  Q
    || |||| | ||||||||| || |||||| | |||||||| |||| | |||| | | |||||||| ||||||||||||||||||||| ||||||| ||||    
T  14464046 atcacttct-catactttgagatatttttaattgaaaaagccaatgtgacatagcaagtggaatgttaattaaactggggcatataattgatgttgttgt 14464144  T
Q  225 ttgagaaatctttgaaaaatataaggcaagagcccctgcccacaaccacccctt 278  Q
    |||||||||||| || ||||| ||||||||||| |||||  ||||| |||||||    
T  14464145 ttgagaaatcttggagaaatagaaggcaagagcacctgcatacaacaacccctt 14464198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 182 - 279
Target Start/End: Complemental strand, 18785413 - 18785316
Alignment:
Q  182 gtggaatgataattaaactggggcatataagtgatgttcttgtttgagaaatctttgaaaaatataaggcaagagcccctgcccacaaccaccccttc 279  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||| || || ||||| |||||||||||||| ||| ||||||||||||||    
T  18785413 gtggaatgttaattaaactgaggcatataagtgatgttcttgtttgagaaattttggagaaatagaaggcaagagccccggccaacaaccaccccttc 18785316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 25 - 278
Target Start/End: Complemental strand, 15906685 - 15906447
Alignment:
Q  25 agaacaaaactttgataacacatccaagtcatacatagggcgaagacatttcaaaacgagtgaaagaaaatttacatattttaatcatcacaatagtcat 124  Q
    ||||||||| |||||||||||||  | ||| | || ||| |||||||||||||||| ||||||||||| ||||||| |||              ||||||    
T  15906685 agaacaaaattttgataacacatttatgtctttcaaaggacgaagacatttcaaaaagagtgaaagaatatttacacatt--------------agtcat 15906600  T
Q  125 attacttattcatactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataagtgatgttcttgt 224  Q
    || |||| | |||||||| ||| |||||||| ||||||||||||| | |||| | | |||||||| ||||||||||||||||||||| ||| ||| ||||    
T  15906599 ataacttct-catacttttcgatatttttgattgaaaaagtcaatgtgacatagcaagtggaatgttaattaaactggggcatataattgaggttgttgt 15906501  T
Q  225 ttgagaaatctttgaaaaatataaggcaagagcccctgcccacaaccacccctt 278  Q
    ||| ||||| || || ||||| |||||||||||  ||||  ||||| |||||||    
T  15906500 ttgcgaaatgttggagaaatagaaggcaagagcggctgcatacaacgacccctt 15906447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 280
Target Start/End: Original strand, 31569849 - 31569993
Alignment:
Q  136 atactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataagtgatgttcttgtttgagaaatct 235  Q
    ||||||||| | |||||||| ||||||||||||| |||||| | | |||||||| |||||||  ||||  ||||| |||||||||||||||||||||| |    
T  31569849 atactttgcaatatttttgattgaaaaagtcaatgtaacatagcaagtggaatgttaattaacttgggatatatatgtgatgttcttgtttgagaaat-t 31569947  T
Q  236 ttgaa-aaatataaggcaagagcccctgcccacaaccaccccttcc 280  Q
    ||||| ||||| ||| ||||||||||| || |||||||||| ||||    
T  31569948 ttgaagaaatagaagacaagagcccctacctacaaccacccattcc 31569993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 216
Target Start/End: Complemental strand, 20881519 - 20881416
Alignment:
Q  113 cacaatagtcatattacttattcatactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataag 212  Q
    |||| ||||||||| |||||||||||||||| || |||||||| ||||||||||||| ||| || | |  ||||||| ||||||||| || |||||||||    
T  20881519 cacattagtcatatcacttattcatactttgggatatttttgattgaaaaagtcaatgtaatatagcaaatggaatgttaattaaaccggagcatataag 20881420  T
Q  213 tgat 216  Q
    ||||    
T  20881419 tgat 20881416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 216
Target Start/End: Original strand, 21683708 - 21683811
Alignment:
Q  113 cacaatagtcatattacttattcatactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataag 212  Q
    |||| ||||||||| |||||||||||||||| || |||||||| ||||||||||||| ||| || | |  ||||||| ||||||||| || |||||||||    
T  21683708 cacattagtcatatcacttattcatactttgggatatttttgattgaaaaagtcaatgtaatatagcaaatggaatgttaattaaaccggagcatataag 21683807  T
Q  213 tgat 216  Q
    ||||    
T  21683808 tgat 21683811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 211
Target Start/End: Original strand, 18715817 - 18715914
Alignment:
Q  113 cacaatagtcatattacttattcatactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataa 211  Q
    |||| ||||||||| |||| | |||||||| ||| |||||||| ||||||||||||| | |||| | | |||||||| |||||||||||||||||||||    
T  18715817 cacattagtcatatcacttct-catactttacgatatttttgattgaaaaagtcaatgtgacatagcaagtggaatgttaattaaactggggcatataa 18715914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 21392949 - 21392883
Alignment:
Q  26 gaacaaaactttgataacacatccaagtcatacatagggcgaagacatttcaaaacgagtgaaagaa 92  Q
    ||||| ||||||||||||||||| ||||| | || ||| ||||| |||||||||| |||||||||||    
T  21392949 gaacagaactttgataacacatctaagtcttgcaaaggacgaaggcatttcaaaaagagtgaaagaa 21392883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 20025431 - 20025366
Alignment:
Q  27 aacaaaactttgataacacatccaagtcatacatagggcgaagacatttcaaaacgagtgaaagaa 92  Q
    |||||| ||||||||| ||||||||||| | || ||| |||||||||||||||| || ||||||||    
T  20025431 aacaaagctttgataaaacatccaagtcttgcaaaggacgaagacatttcaaaaagaatgaaagaa 20025366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 113 - 280
Target Start/End: Original strand, 3569042 - 3569206
Alignment:
Q  113 cacaatagtcatattacttattcatactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataag 212  Q
    |||| ||||||||| ||||||||||| ||||||| |||||||| ||||||||||||| |||||| | | || ||||| ||||||||||||||   |||||    
T  3569042 cacattagtcatatcacttattcataatttgcgatatttttgattgaaaaagtcaatgtaacatagtaagttgaatgttaattaaactgggg---ataag 3569138  T
Q  213 tgatgttcttgtttgagaaatctttgaaaaatataaggcaagagcccctgcccacaaccaccccttcc 280  Q
    |||||||||||||| |||||||||||| ||||| || ||||||||||||||  ||||||||| |||||    
T  3569139 tgatgttcttgttttagaaatctttgagaaataaaacgcaagagcccctgcatacaaccaccacttcc 3569206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 136 - 278
Target Start/End: Complemental strand, 39702644 - 39702502
Alignment:
Q  136 atactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataagtgatgttcttgtttgagaaatct 235  Q
    ||||||||| | |||||||| ||||||||||||| |||||| | | |||||||| |||||||  ||||  ||||| |||||||||||||||||||||| |    
T  39702644 atactttgcaatatttttgattgaaaaagtcaatgtaacatagcaagtggaatgttaattaacttgggatatatatgtgatgttcttgtttgagaaattt 39702545  T
Q  236 ttgaaaaatataaggcaagagcccctgcccacaaccacccctt 278  Q
    | ||  |||| ||||||||||||||| || ||||||| |||||    
T  39702544 tggagtaatagaaggcaagagcccctacctacaaccatccctt 39702502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 25 - 263
Target Start/End: Original strand, 22177 - 22405
Alignment:
Q  25 agaacaaaactttgataacacatccaagtcatacatagggcgaagacatttcaaaacgagtgaaagaaa-atttacatattttaatcatcacaatagtca 123  Q
    |||||||||||||||||||||||||||||| | || ||| |||||||||||||||| |||| ||| ||| |||||||   ||||||        ||||||    
T  22177 agaacaaaactttgataacacatccaagtcttgcaaaggacgaagacatttcaaaaagagtaaaaaaaatatttacac--tttaat--------tagtca 22266  T
Q  124 tattacttattcatactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataagtgatgttcttg 223  Q
    ||| |||||||||||||||| || |||||||| |||||||||  || |||||| | | |||||||| |||  || ||||||||||||||||||||| |||    
T  22267 tatcacttattcatactttgagatatttttgattgaaaaagttgatataacatagcaagtggaatgttaaccaatctggggcatataagtgatgttattg 22366  T
Q  224 tttgagaaatctttgaaaaatataaggcaagagcccctgc 263  Q
    |||||||||| |||| | |||| |||||||||||||||||    
T  22367 tttgagaaat-tttggagaataaaaggcaagagcccctgc 22405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 280
Target Start/End: Complemental strand, 1702 - 1558
Alignment:
Q  136 atactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataagtgatgttcttgtttgagaaatct 235  Q
    ||||||||| | |||||||| | ||||||||||| |||||| | | |||||||| |||||||  ||||  ||||| ||||||||||||||||| |||| |    
T  1702 atactttgcaatatttttgattaaaaaagtcaatgtaacatagcaagtggaatgttaattaacttgggatatatatgtgatgttcttgtttgaaaaattt 1603  T
Q  236 ttgaaaaatataaggcaagagcccctgcccacaaccaccccttcc 280  Q
    | ||  |||| ||||||||||||||| || |||||||||| ||||    
T  1602 tggagtaatagaaggcaagagcccctacctacaaccacccattcc 1558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 30 - 278
Target Start/End: Complemental strand, 7964533 - 7964300
Alignment:
Q  30 aaaactttgataacacatccaagtcatacatagggcgaagacatttcaaaacgagtgaaagaaaatttacatattttaatcatcacaatagtcatattac 129  Q
    ||||||||||||||||||  | ||| | || ||| |||||||||||||||| ||||||||||| |||||              |||| ||||||||| ||    
T  7964533 aaaactttgataacacatttatgtctttcaaaggacgaagacatttcaaaaagagtgaaagaatattta--------------cacattagtcatatcac 7964448  T
Q  130 ttattcatactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataagtgatgttcttgtttgag 229  Q
    ||  ||||||||||| | |||||||| ||||||||||||| |||||| | | |||||||| ||||||||||||||||||||| ||||||| |||||||||    
T  7964447 tt-ctcatactttgcaatatttttgattgaaaaagtcaatgtaacatagcaagtggaatgttaattaaactggggcatataattgatgttgttgtttgag 7964349  T
Q  230 aaatctttgaaaaatataaggcaagagcccctgcccacaaccacccctt 278  Q
    |||| || || ||||| ||||||||||| |||||  ||||| |||||||    
T  7964348 aaatgttggagaaatagaaggcaagagcgcctgcatacaacgacccctt 7964300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 25 - 263
Target Start/End: Original strand, 8224199 - 8224422
Alignment:
Q  25 agaacaaaactttgataacacatccaagtcatacatagggcgaagacatttcaaaacgagtgaaagaaaatttacatattttaatcatcacaatagtcat 124  Q
    |||||||||||||||||||||||  | ||| | || ||| |||||||||||||||| ||||||||| | ||||||| |||              ||||||    
T  8224199 agaacaaaactttgataacacatttatgtctttcaaaggacgaagacatttcaaaaggagtgaaagcatatttacacatt--------------agtcat 8224284  T
Q  125 attacttattcatactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataagtgatgttcttgt 224  Q
    || |||| | |||||||||||| |||||||| ||||||||||||| | |||| | | |||||||| ||||||||||||||||||||| ||||||| ||||    
T  8224285 atcacttct-catactttgcgatatttttgattgaaaaagtcaatgtgacatagcaagtggaatgttaattaaactggggcatataattgatgttgttgt 8224383  T
Q  225 ttgagaaatctttgaaaaatataaggcaagagcccctgc 263  Q
    |||| |||| || || ||||| ||||||||||| |||||    
T  8224384 ttgataaatgttggagaaatagaaggcaagagcgcctgc 8224422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 25 - 263
Target Start/End: Original strand, 22932509 - 22932732
Alignment:
Q  25 agaacaaaactttgataacacatccaagtcatacatagggcgaagacatttcaaaacgagtgaaagaaaatttacatattttaatcatcacaatagtcat 124  Q
    ||||||||||||| |||||||||||||||  | || ||| |||||||||||||||| ||||||||||| ||||||  |||              ||||||    
T  22932509 agaacaaaactttaataacacatccaagttttgcaaaggacgaagacatttcaaaaagagtgaaagaatatttacgcatt--------------agtcat 22932594  T
Q  125 attacttattcatactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataagtgatgttcttgt 224  Q
    || |||||||||||||||| || |||||||| |||||||||  || || ||| | | |||||||| |||  || | ||||||||||||||||||| ||||    
T  22932595 atcacttattcatactttgagatatttttgattgaaaaagttgatgtagcatagcaagtggaatgttaaccaatccggggcatataagtgatgttattgt 22932694  T
Q  225 ttgagaaatctttgaaaaatataaggcaagagcccctgc 263  Q
    ||||||||| |||| |  ||| |||||||||| ||||||    
T  22932695 ttgagaaat-tttggaggataaaaggcaagagtccctgc 22932732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 33 - 233
Target Start/End: Complemental strand, 43974298 - 43974108
Alignment:
Q  33 actttgataacacatccaagtcatacatagggcgaagacatttcaaaacgagtgaaagaaaatttacatattttaatcatcacaatagtcatattactta 132  Q
    |||||||||||||||||||||| | || ||| | |||||||||||||| ||||||||||| |||||              |||| ||||||||| |||||    
T  43974298 actttgataacacatccaagtcttgcaaaggacaaagacatttcaaaaagagtgaaagaatattta--------------cacattagtcatatcactta 43974213  T
Q  133 ttcatactttgcgaaatttttgactgaaaaagtcaatctaac----atggaacgtggaatgataattaaactgg-ggcatataagtgatgttcttgtttg 227  Q
    ||||||||||| || | |||||| ||||||||||||| ||||    || | | ||| |||| |||||||||||| |||||||||||| ||||||||||||    
T  43974212 ttcatactttgtgata-ttttgattgaaaaagtcaatgtaacatatatagcaagtgaaatgttaattaaactggaggcatataagtggtgttcttgtttg 43974114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 134 - 278
Target Start/End: Complemental strand, 19111608 - 19111464
Alignment:
Q  134 tcatactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataagtgatgttcttgtttgagaaat 233  Q
    ||||||||||||| |||||||| ||||||||||||| | |||| | | |||||||| |||||||| |||||||||||| ||||||| |||||||||||||    
T  19111608 tcatactttgcgatatttttgattgaaaaagtcaatgtgacatagcaagtggaatgttaattaaattggggcatataattgatgttgttgtttgagaaat 19111509  T
Q  234 ctttgaaaaatataaggcaagagcccctgcccacaaccacccctt 278  Q
     || || ||||| ||||||||||| ||| |  ||||| |||||||    
T  19111508 gttggagaaatagaaggcaagagcgcctacatacaacgacccctt 19111464  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 259
Target Start/End: Complemental strand, 43593220 - 43592995
Alignment:
Q  25 agaacaaaactttgataacacatccaagtcatacatagggcgaagacatttcaaaacgagtgaaagaaaatttacatattttaatcatcacaatagtcat 124  Q
    |||||| |||||||||||||||||||| || | || ||| |||||||||||||||| |||||||| || ||||| | |||              ||||||    
T  43593220 agaacagaactttgataacacatccaaatcttgcaaaggacgaagacatttcaaaaagagtgaaataatatttatacatt--------------agtcat 43593135  T
Q  125 attacttattcatactttgcgaaattttt-----gactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataagtgatgtt 219  Q
    || | |||||||||||||||||  |||||     |  ||||||||||||| |||||| | | |||||||| |||||||||||| ||||||||||||||||    
T  43593134 atcagttattcatactttgcgagtttttttttttgtttgaaaaagtcaatgtaacatagcaagtggaatgttaattaaactggagcatataagtgatgtt 43593035  T
Q  220 cttgtttgagaaatctttgaaaaatataaggcaagagccc 259  Q
    ||| ||||||||||||| || ||||| || | ||||||||    
T  43593034 cttatttgagaaatcttggagaaataaaatggaagagccc 43592995  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 52374734 - 52374804
Alignment:
Q  30 aaaactttgataacacatccaagtcatacatagggcgaagacatttcaaaacgagtgaaagaaaatttaca 100  Q
    ||||||||||||||||||  | ||| | || ||| |||||||||||||||| ||||||||||| |||||||    
T  52374734 aaaactttgataacacatttatgtctttcaaaggacgaagacatttcaaaaagagtgaaagaatatttaca 52374804  T

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Target: scaffold0041 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 25 - 263
Target Start/End: Complemental strand, 31922 - 31700
Alignment:
Q  25 agaacaaaactttgataacacatccaagtcatacatagggcgaagacatttcaaaacgagtgaaagaaaatttacatattttaatcatcacaatagtcat 124  Q
    ||||||||||||||||||||||| |||||| | || ||| |||||||||||||||| |||||||| || ||||||| |||              ||||||    
T  31922 agaacaaaactttgataacacattcaagtcttgcaaaggacgaagacatttcaaaaagagtgaaaaaatatttacacatt--------------agtcat 31837  T
Q  125 attacttattcatactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataagtgatgttcttgt 224  Q
    || |||||||||||||||| || ||||| || |||||||||  || |||||| | | |||||||| |||  || ||||||||||||||||||||| ||||    
T  31836 atcacttattcatactttgagatatttt-gattgaaaaagttgatgtaacatagcaagtggaatgttaaccaatctggggcatataagtgatgttattgt 31738  T
Q  225 ttgagaaatctttgaaaaatataaggcaagagcccctgc 263  Q
    |||||| || |||| | |||| |||||||||||||||||    
T  31737 ttgagatat-tttggagaataaaaggcaagagcccctgc 31700  T

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Target: scaffold0054 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 118 - 258
Target Start/End: Original strand, 50215 - 50351
Alignment:
Q  118 tagtcatattacttattcatactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataagtgatg 217  Q
    ||||||||| ||||||||||| ||||||| |||||| | ||||||||||||| |||||| | | || ||||| ||||||||||||||   |||||||||     
T  50215 tagtcatatcacttattcataatttgcgatattttt-attgaaaaagtcaatgtaacatagcaagttgaatgttaattaaactgggg---ataagtgata 50310  T
Q  218 ttcttgtttgagaaatctttgaaaaatataaggcaagagcc 258  Q
    ||||||||| |||||||||||| ||||| ||||||||||||    
T  50311 ttcttgttttagaaatctttgagaaataaaaggcaagagcc 50351  T

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Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 136 - 280
Target Start/End: Original strand, 6506530 - 6506674
Alignment:
Q  136 atactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataagtgatgttcttgtttgagaaatct 235  Q
    ||||||||| | |||||| | ||||||||||||| |||||| | | |||||||| |||||||  ||||  ||||| |||||||||||||||||||||| |    
T  6506530 atactttgcaatattttttattgaaaaagtcaatgtaacatagcaagtggaatgttaattaacttgggatatatatgtgatgttcttgtttgagaaattt 6506629  T
Q  236 ttgaaaaatataaggcaagagcccctgcccacaaccaccccttcc 280  Q
    | || ||||| ||||||||||||||| || |||||||||| ||||    
T  6506630 tggagaaatagaaggcaagagcccctacctacaaccacccattcc 6506674  T

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Target: scaffold0557 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 25 - 278
Target Start/End: Original strand, 6908 - 7145
Alignment:
Q  25 agaacaaaactttgataacacatccaagtcatacatagggcgaagacatttcaaaacgagtgaaagaaaatttacatattttaatcatcacaatagtcat 124  Q
    |||||||||||||||||||||||  | ||| | || ||| ||||||||||| |||| ||||||||||| ||||||| |||              ||||||    
T  6908 agaacaaaactttgataacacatttatgtctttcaaaggacgaagacatttaaaaaagagtgaaagaatatttacacatt--------------agtcat 6993  T
Q  125 attacttattcatactttgcgaaatttttgactgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatataagtgatgttcttgt 224  Q
    || |||| | |||||||||| | |||||||| ||||||  ||||| | |||| | | || ||||| |||||||||| |||||| ||| ||||||| ||||    
T  6994 atcacttct-catactttgcaatatttttgattgaaaat-tcaatgtgacatagcaagtagaatgttaattaaactagggcatttaattgatgttgttgt 7091  T
Q  225 ttgagaaatctttgaaaaatataaggcaagagcccctgcccacaaccacccctt 278  Q
    ||||||||| || || ||||| ||||||||||| |||||  ||||| |||||||    
T  7092 ttgagaaatgttggagaaatagaaggcaagagcgcctgcatacaacgacccctt 7145  T

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Target: scaffold0590 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 9473 - 9539
Alignment:
Q  26 gaacaaaactttgataacacatccaagtcatacatagggcgaagacatttcaaaacgagtgaaagaa 92  Q
    ||||||||||||||||||||||| ||||| | || ||| ||||| |||||||||| |||||||||||    
T  9473 gaacaaaactttgataacacatctaagtcttgcaaaggacgaaggcatttcaaaaagagtgaaagaa 9539  T

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Target: scaffold0726 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 5214 - 5162
Alignment:
Q  157 tgaaaaagtcaatctaacatggaacgtggaatgataattaaactggggcatat 209  Q
    ||||||||||||| | |||| | | |||||||| |||||||||||||||||||    
T  5214 tgaaaaagtcaatgtgacatagcaagtggaatgttaattaaactggggcatat 5162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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