View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_low_31 (Length: 358)
Name: NF3055_low_31
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_low_31 |
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| [»] scaffold0024 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 18366071 - 18365751
Alignment:
| Q |
18 |
ataatagatttcatttatatttgaacatgtaaatatcatggttaattacattcagcggataattaatgagttttgacactatgctaatcagccatccact |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18366071 |
ataatagatttcatttatatttgaacatgtaaatatcatggttaattacattcagcggataattaatgagttttgacactatgctaatcagccatgcact |
18365972 |
T |
|
| Q |
118 |
aaacgtaattaaccacatatctagacggtgttaagttaaccatccaaattgttgtcgtcatatttgtgggtccaagtatcatttctgtaaacttttttca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18365971 |
aaacgtaattaaccacatatctagacggtgttaagttaaccatccaaattgttgttgtcatatttgtgggtccaagtatcatttctgtaaacttttttca |
18365872 |
T |
|
| Q |
218 |
caatgtatatttagtataaaataccaatcttggttagaaattgagttaattacttttatttgctgcaggtatactcaaggatatgaccataatcttactt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18365871 |
caatgtatatttagtataaaataccaatcttggttagaaattgagttaattacttttatttgctgcaggtatactcaaggatatgaccataatcttactt |
18365772 |
T |
|
| Q |
318 |
ttctgaccataaaggtatgta |
338 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
18365771 |
ttctgaccataaaggtatgta |
18365751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 18371335 - 18371015
Alignment:
| Q |
18 |
ataatagatttcatttatatttgaacatgtaaatatcatggttaattacattcagcggataattaatgagttttgacactatgctaatcagccatccact |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18371335 |
ataatagatttcatttatatttgaacatgtaaatatcatggttaattacattcagcggataattaatgagttttgacactatgctaatcagccatgcact |
18371236 |
T |
|
| Q |
118 |
aaacgtaattaaccacatatctagacggtgttaagttaaccatccaaattgttgtcgtcatatttgtgggtccaagtatcatttctgtaaacttttttca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18371235 |
aaacgtaattaaccacatatctagacggtgttaagttaaccatccaaattgttgttgtcatatttgtgggtccaagtatcatttctgtaaacttttttca |
18371136 |
T |
|
| Q |
218 |
caatgtatatttagtataaaataccaatcttggttagaaattgagttaattacttttatttgctgcaggtatactcaaggatatgaccataatcttactt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18371135 |
caatgtatatttagtataaaataccaatcttggttagaaattgagttaattacttttatttgctgcaggtatactcaaggatatgaccataatcttactt |
18371036 |
T |
|
| Q |
318 |
ttctgaccataaaggtatgta |
338 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
18371035 |
ttctgaccataaaggtatgta |
18371015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 18375625 - 18375305
Alignment:
| Q |
18 |
ataatagatttcatttatatttgaacatgtaaatatcatggttaattacattcagcggataattaatgagttttgacactatgctaatcagccatccact |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18375625 |
ataatagatttcatttatatttgaacatgtaaatatcatggttaattacattcagcggataattaatgagttttgacactatgctaatcagccatgcact |
18375526 |
T |
|
| Q |
118 |
aaacgtaattaaccacatatctagacggtgttaagttaaccatccaaattgttgtcgtcatatttgtgggtccaagtatcatttctgtaaacttttttca |
217 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18375525 |
aaacgtaattaaccacatatctagacggtgttaagttaaccatccaaattgttgttgtcatatttgtgggtccaagtatcatttctgtaaacttttttca |
18375426 |
T |
|
| Q |
218 |
caatgtatatttagtataaaataccaatcttggttagaaattgagttaattacttttatttgctgcaggtatactcaaggatatgaccataatcttactt |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18375425 |
caatgtatatttagtataaaataccaatcttggttagaaattgagttaattacttttatttgctgcaggtatactcaaggatatgaccataatcttactt |
18375326 |
T |
|
| Q |
318 |
ttctgaccataaaggtatgta |
338 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
18375325 |
ttctgaccataaaggtatgta |
18375305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 3021966 - 3021646
Alignment:
| Q |
18 |
ataatagatttcatttatatttgaacatgtaaatatcatggttaattacattcagcggataattaatgagttttgacactatgctaatcagccatccact |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3021966 |
ataatagatttaatttatatttgaacatgtaaatatcatggttaattacattcagcggataattaatgagttttgacactatgctaatcagccatgcact |
3021867 |
T |
|
| Q |
118 |
aaacgtaattaaccacatatctagacggtgttaagttaaccatccaaattgttgtcgtcatatttgtgggtccaagtatcatttctgtaaacttttttca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3021866 |
aaacgtaattaaccacatatctagacggtgttaagttaaccatccaaattgttgttgtcatatttgtgggtccaagtatcatttctgtaaacttttttca |
3021767 |
T |
|
| Q |
218 |
caatgtatatttagtataaaataccaatcttggttagaaattgagttaattacttttatttgctgcaggtatactcaaggatatgaccataatcttactt |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3021766 |
caatgtatatttagtataaaataccaatcttggttagaaattgagttaattacttttatttgctgcaggtatactcaaggatatgaccataatcttactt |
3021667 |
T |
|
| Q |
318 |
ttctgaccataaaggtatgta |
338 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
3021666 |
ttctgaccataaaggtatgta |
3021646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 332
Target Start/End: Complemental strand, 144493 - 144448
Alignment:
| Q |
287 |
tatactcaaggatatgaccataatcttacttttctgaccataaagg |
332 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||||||||||||||||| |
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| T |
144493 |
tatactaaaggatatgaccacaatcttaattttctgaccataaagg |
144448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 330
Target Start/End: Original strand, 145229 - 145274
Alignment:
| Q |
285 |
ggtatactcaaggatatgaccataatcttacttttctgaccataaa |
330 |
Q |
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|||||||||||||||||| ||| ||| | ||||||||||||||||| |
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|
| T |
145229 |
ggtatactcaaggatatggccacaatgtcacttttctgaccataaa |
145274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 19808807 - 19808748
Alignment:
| Q |
109 |
ccatccactaaacgtaattaaccacatatctagacggtgttaagttaaccatccaaattgttgtc |
173 |
Q |
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||||||||||||||||||| ||||||||| | ||||| |||||||||||||||||||||| |
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|
| T |
19808807 |
ccatccactaaacgtaatttaccacatatttgaacggt-----gttaaccatccaaattgttgtc |
19808748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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