View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_low_35 (Length: 337)
Name: NF3055_low_35
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 3 - 326
Target Start/End: Complemental strand, 33401575 - 33401252
Alignment:
| Q |
3 |
gtttaattgggggtgctagacttaatgagagcatacctgtaagtaaatatttatatatcttcgtcactatataannnnnnncgtgttaaatataattttc |
102 |
Q |
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| T |
33401575 |
gtttaattgggggtgctagacttaatgagagcatacctgtaagtaaatatttatatatctttgtcactatataatttttttcgtgttaaatataattttc |
33401476 |
T |
|
| Q |
103 |
ttgtcgacattttgagaaaattaatcttgtttgtgttgatgtggaatgaaacagttgagtgaacaagaggatctgattgtatggatgagaacagcagcac |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33401475 |
ttgtcgacattttgagaaaattaatcttgtttgtgttgatgtggaatgaaacagttgagtgaacaagaggatctgattgtatggatgagaacagcagcac |
33401376 |
T |
|
| Q |
203 |
tgcctacattcagaaaattatacgggaagattgaagtcgaccttgaagctaacgatgaaataactgtagtaatagagaacaattataatacatatcaatt |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33401375 |
tgcctacattcagaaaattatacgggaagattgaagtcgaccttgaagctaacgatgaaataacggtagtaatagagaacaattataatacatatcaatt |
33401276 |
T |
|
| Q |
303 |
tggaggaacaaagagtgtgattct |
326 |
Q |
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|||||||||||||||||||||||| |
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| T |
33401275 |
tggaggaacaaagagtgtgattct |
33401252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 43600904 - 43601010
Alignment:
| Q |
154 |
cagttgagtgaacaagaggatctgattgtatggatgagaacagcagcactgcctacattcagaaaattatacgggaagattgaagtcgaccttgaagcta |
253 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| | || || ||||||||| | || |||||||| || ||| ||||||| || |
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| T |
43600904 |
cagttgagtgaacaagaggatctgattgtttggatgagaacagcagcattaccaacgttcagaaaactgtatgggaagatagagtccgatcttgaagtta |
43601003 |
T |
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| Q |
254 |
acgatga |
260 |
Q |
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||||||| |
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| T |
43601004 |
acgatga |
43601010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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