View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3055_low_36 (Length: 336)

Name: NF3055_low_36
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3055_low_36
NF3055_low_36
[»] chr4 (8 HSPs)
chr4 (207-284)||(51315567-51315644)
chr4 (41-137)||(51315709-51315802)
chr4 (11-103)||(55659579-55659671)
chr4 (23-103)||(54862405-54862485)
chr4 (23-103)||(54626866-54626946)
chr4 (27-103)||(3672074-3672150)
chr4 (21-96)||(55665806-55665881)
chr4 (59-100)||(52986667-52986708)
[»] chr8 (1 HSPs)
chr8 (21-103)||(9889350-9889432)
[»] chr2 (1 HSPs)
chr2 (11-96)||(13401257-13401342)


Alignment Details
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 51315644 - 51315567
Alignment:
Q  207 aagtttcaaacaaacctggtcctcaggagaatcgtccttaactatacatcgaagaaaacgaggaagagattgaacaag 284  Q
    ||||||||||||||||||||||| |||| ||||||||||||||| |||  ||||||||||||||||||||||||||||    
T  51315644 aagtttcaaacaaacctggtcctgaggaaaatcgtccttaactagacacggaagaaaacgaggaagagattgaacaag 51315567  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 137
Target Start/End: Complemental strand, 51315802 - 51315709
Alignment:
Q  41 acaagtattggtacaaacccatgatcaattagcaacttagtgttctcagaagttccagctgctgctatctttgcgagtgcgaaagcagagtaatact 137  Q
    |||||||||||||||   |||||||||||||||||||||||||||||||||||||||||   |||||| ||||  ||||||||||||| ||||||||    
T  51315802 acaagtattggtacagctccatgatcaattagcaacttagtgttctcagaagttccagc---tgctatgtttgtaagtgcgaaagcagcgtaatact 51315709  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 55659579 - 55659671
Alignment:
Q  11 acatcatcattaggtgaactaagtagcttgacaagtattggtacaaacccatgatcaattagcaacttagtgttctcagaagttccagctgct 103  Q
    ||||||||  |||||||||||||||||||||||||||||||||||  ||| |||||||| | || |||||||||| ||||||||||| |||||    
T  55659579 acatcatcgctaggtgaactaagtagcttgacaagtattggtacagccccgtgatcaatgaccaccttagtgttcacagaagttccacctgct 55659671  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 54862405 - 54862485
Alignment:
Q  23 ggtgaactaagtagcttgacaagtattggtacaaacccatgatcaattagcaacttagtgttctcagaagttccagctgct 103  Q
    ||||||||||||||||||| || |||||||||   |||||||||||||| || |||||||||||| |||||||||| ||||    
T  54862405 ggtgaactaagtagcttgataaatattggtactgccccatgatcaattaccaccttagtgttctccgaagttccagatgct 54862485  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 54626946 - 54626866
Alignment:
Q  23 ggtgaactaagtagcttgacaagtattggtacaaacccatgatcaattagcaacttagtgttctcagaagttccagctgct 103  Q
    ||||||||||| ||||||||||  ||||||||    |||||||||| || || ||||||||||||||||||||||||||||    
T  54626946 ggtgaactaagaagcttgacaaacattggtactgcgccatgatcaactaccaccttagtgttctcagaagttccagctgct 54626866  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 3672074 - 3672150
Alignment:
Q  27 aactaagtagcttgacaagtattggtacaaacccatgatcaattagcaacttagtgttctcagaagttccagctgct 103  Q
    |||| ||||| ||||| |||| |||||||  ||||||||||||||  | |||||||||||||||||||||| |||||    
T  3672074 aactgagtaggttgactagtaatggtacagccccatgatcaattacaaccttagtgttctcagaagttccacctgct 3672150  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 55665806 - 55665881
Alignment:
Q  21 taggtgaactaagtagcttgacaagtattggtacaaacccatgatcaattagcaacttagtgttctcagaagttcc 96  Q
    |||||||||||||||||| |||||||||||||||   ||||||||| | ||||| |||| | ||||| ||||||||    
T  55665806 taggtgaactaagtagctcgacaagtattggtactgccccatgatctactagcaccttaatattctctgaagttcc 55665881  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 52986667 - 52986708
Alignment:
Q  59 ccatgatcaattagcaacttagtgttctcagaagttccagct 100  Q
    ||||||||||||| || ||||||||||| |||||||||||||    
T  52986667 ccatgatcaattaccaccttagtgttcttagaagttccagct 52986708  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 9889432 - 9889350
Alignment:
Q  21 taggtgaactaagtagcttgacaagtattggtacaaacccatgatcaattagcaacttagtgttctcagaagttccagctgct 103  Q
    |||||||||| ||||| ||||| |||| |||||||  ||||||||||||||  | |||||||||||||||||||||| |||||    
T  9889432 taggtgaactgagtaggttgactagtaatggtacagccccatgatcaattacaaccttagtgttctcagaagttccacctgct 9889350  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 13401342 - 13401257
Alignment:
Q  11 acatcatcattaggtgaactaagtagcttgacaagtattggtacaaacccatgatcaattagcaacttagtgttctcagaagttcc 96  Q
    ||||||||| | || |||||||||||||| |||| ||| || ||   |||||||||||||| || |||||| ||||||||||||||    
T  13401342 acatcatcacttggagaactaagtagcttcacaaatatcggcactgccccatgatcaattaccaccttagtattctcagaagttcc 13401257  T

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