View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_low_42 (Length: 299)
Name: NF3055_low_42
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 41557875 - 41557584
Alignment:
| Q |
1 |
aagaacatagaaattaaacaaaaatgatgattgcgataaatgatgaatgtgagatttgagataagaatggaacgaaccagttggaatctgaaagagtaca |
100 |
Q |
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| T |
41557875 |
aagaacatagaaattaaacaaaaatgatgattgcgataaatgatgaatgtgagatttgagataagaatggaacgaaccagttggaatctgaaagagtaca |
41557776 |
T |
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| Q |
101 |
gtgatttttgaatcgatcgatgaggatgatcggtgattttctgttggttaggttaactagcaaacttcgagtgaaaactgaattgaaaaaacgaatgaga |
200 |
Q |
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| T |
41557775 |
gtgatttttgaatcgatcgatgaggatgatcggtgattttctgttggttaggttaactagcaaacttcgagtgaaaactgaattgaaaaaacgaatgaga |
41557676 |
T |
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| Q |
201 |
ttgaatagttaaggttagggaaattcagaatctggtgtttgtgaagaagaaga---------agaacctttgattttgtcgagtagaagaat |
283 |
Q |
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| T |
41557675 |
ttgaatagttaaggttagggaaattcagaatctggtgtttgtgaagaagaagaagaagaagaagaacctttgattttgtcgagtagaagaat |
41557584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 41542111 - 41541842
Alignment:
| Q |
1 |
aagaacatagaaattaaacaaaaatgatgattgcgataaatgatgaatgtgagatttgagataagaatggaacgaaccagttggaatctgaaagagtaca |
100 |
Q |
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| T |
41542111 |
aagaacatagaaattaaacaaaaatgatgattacgacaaatcatga--------tttgagattagaagagaacgaaccagttggaatctgaaagagtaca |
41542020 |
T |
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| Q |
101 |
gtgatttttgaatcgatcgatgaggatgatcggtgattttctgttggttaggttaactagcaaacttcgagtgaaaactgaattgaaaaaacgaatgaga |
200 |
Q |
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| T |
41542019 |
gtgatttctgaatcgattgatgagaatgatcgatgagtttccgttggtgagattgatgagtaaacttcgagtgaattctgaactg-aaaaacgaatga-a |
41541922 |
T |
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| Q |
201 |
ttgaatagttaaggttagggaaattcagaatctggtgtttgtgaagaagaagaagaacctttgattttgtcgagtagaagaat |
283 |
Q |
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|||||| ||| | ||||||||||| | ||||| | |||||||||||||||||||||||||||||||||||| |||| |
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| T |
41541921 |
ttgaattattaggtttagggaaattgaatatctgaag---aggaagaagaagaagaacctttgattttgtcgagtagatgaat |
41541842 |
T |
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