View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_low_43 (Length: 292)
Name: NF3055_low_43
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 37 - 285
Target Start/End: Complemental strand, 50556418 - 50556170
Alignment:
| Q |
37 |
aagtgaattatttatacagatcttgaagataaaaattgttaattttctctcctgtcattgagtacattgattgtgtttatgcatttgtaggtatcagata |
136 |
Q |
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| T |
50556418 |
aagtgaattatttatacagatcttgaagataaaaattgttaattttctctcctgtcattgagtacattgattgtgtttatgcatttgtaggtatcagata |
50556319 |
T |
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| Q |
137 |
cagactttacatggcctgacttgcaagcaaaattaaataatgagttgctgaataatttgggaaacttcgtcaaccgagttttgagttttattgccaaacc |
236 |
Q |
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| T |
50556318 |
cagactttacatggcctgacttgcaagcaaaattaaataatgagttgctgaataatttgggaaacttcgtcaaccgagttttgagttttattgccaaacc |
50556219 |
T |
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| Q |
237 |
tgaaggttggttgagctcttttgtaatttttgacttgaaatctgtgctg |
285 |
Q |
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| T |
50556218 |
tgaaggttggttgagctcttttgtaatttttgacttgaaatctgtgctg |
50556170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 54 - 217
Target Start/End: Complemental strand, 50567828 - 50567665
Alignment:
| Q |
54 |
agatcttgaagataaaaattgttaattttctctcctgtcattgagtacattgattgtgtttatgcatttgtaggtatcagatacagactttacatggcct |
153 |
Q |
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| T |
50567828 |
agatcttgaagataaaaattgttaattttctctcctgtcatcgagtacattgaatatgtttatgcatttgtaggtatcagatacaggctttacagggcct |
50567729 |
T |
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| Q |
154 |
gacttgcaagcaaaattaaataatgagttgctgaataatttgggaaacttcgtcaaccgagttt |
217 |
Q |
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| T |
50567728 |
gacttgcaagcaaaattaaatagtgagttgctgaatactttgggaaacttcgtcaaccaagttt |
50567665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 93 - 277
Target Start/End: Complemental strand, 29767710 - 29767527
Alignment:
| Q |
93 |
attgagtacattgattgtgtttatgcatttgtaggtatcagatacagactttacatggcctgacttgcaagcaaaattaaataatgagttgctgaataat |
192 |
Q |
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|||||||||||||| |||| | |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||| | |||||||| |
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| T |
29767710 |
attgagtacattgaatgtgat-atgcatttgtaggtatcagatacactttttacatggtctgacttgcaagcaaaattaaatactgagcttctgaataac |
29767612 |
T |
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| Q |
193 |
ttgggaaacttcgtcaaccgagttttgagttttattgccaaacctgaaggttggttgagctcttttgtaatttttgacttgaaat |
277 |
Q |
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| T |
29767611 |
ttgggaaactttgtcaaccgagttttgagttttattgccaaacctgcaggttggtttagctctttggtaatttttctcttgaaat |
29767527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 174
Target Start/End: Complemental strand, 50562366 - 50562246
Alignment:
| Q |
56 |
atcttgaagataaaaattgttaattttctctcctgtcattgagtacat--tgattgtgtttatgcatttgtaggtatcagatacagactttacatggcct |
153 |
Q |
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|||||||| ||||||| |||| ||||||||| |||||||||||||||| ||| |||||||||||||||||| || | ||||| |||||||||||||||| |
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| T |
50562366 |
atcttgaatataaaaaatgttcattttctcttctgtcattgagtacatattgaatgtgtttatgcatttgtaagtctaagatatagactttacatggcct |
50562267 |
T |
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| Q |
154 |
gacttgcaagcaaaattaaat |
174 |
Q |
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| T |
50562266 |
gacttgcaaacaaaattaaat |
50562246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 147 - 217
Target Start/End: Complemental strand, 50573559 - 50573489
Alignment:
| Q |
147 |
atggcctgacttgcaagcaaaattaaataatgagttgctgaataatttgggaaacttcgtcaaccgagttt |
217 |
Q |
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| T |
50573559 |
atggcctgacttgcaagcaaagttaaatagtgagttgctgaatactttttgaaacttcgtcaaccaagttt |
50573489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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