View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_low_45 (Length: 285)
Name: NF3055_low_45
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_low_45 |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 91 - 245
Target Start/End: Complemental strand, 16402551 - 16402397
Alignment:
| Q |
91 |
aatcatatcataaacataattactccatcttcttgatcactagtatttgttgatgttaatgattcgcaatcacaatatttcaatctcatagtagtagata |
190 |
Q |
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| T |
16402551 |
aatcatatcataaacataattactccatcttcttgatcactagtatttgttgatgttaatgattcacaatcacaatatttcaatctcatagtagtagata |
16402452 |
T |
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| Q |
191 |
gaataagttcatatttgaatcatagtgagtttgacaaaatcgcagtgacatcgtg |
245 |
Q |
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| T |
16402451 |
gaataagttcatatttgaatcatagtgagtttgacaaaatcgcagtgacatcgtg |
16402397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 16402705 - 16402659
Alignment:
| Q |
16 |
attgatttattgaaaataagtttgatacctatggtctagctattttc |
62 |
Q |
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| T |
16402705 |
attgatttattaaaaataagtttgatatctatgatctagctattttc |
16402659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 101 - 240
Target Start/End: Original strand, 14304441 - 14304581
Alignment:
| Q |
101 |
taaacataattactccatcttcttgatcactagtatttgttgatgttaatgattcgcaa-tcacaatatttcaatctcatagtagtagatagaataagtt |
199 |
Q |
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| T |
14304441 |
taaacatatctactccatcttattgatcaatgatctttgttgatgtcaatgattcacaactcacaatattgcagtctcatagtagtagattgaataagat |
14304540 |
T |
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| Q |
200 |
catatttgaatcatagtgagtttgacaaaatcgcagtgaca |
240 |
Q |
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| T |
14304541 |
catgttggaatcacggtgagtctcacaaaatcacattgaca |
14304581 |
T |
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