View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_low_48 (Length: 272)
Name: NF3055_low_48
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 7e-64; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 105 - 256
Target Start/End: Complemental strand, 32620764 - 32620613
Alignment:
| Q |
105 |
gaggggaaaagtattaatgcatttcattataaaccaagtcatagatacaaggcggtacatcaacataagtttgggagctagcttccaacagggccgcatg |
204 |
Q |
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| T |
32620764 |
gaggggaaaagtattaatgcatttcattataaaccaagtcatagatacaaggcggtacatcaacataagtttgggagctagcttccaacagggccgcgtg |
32620665 |
T |
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| Q |
205 |
agttaactcgtaagcaatcctattagcttgcctccggcaatactctacctta |
256 |
Q |
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| T |
32620664 |
agctaactcgtgagcaaccctatttgcttgcctccaacaatactctacctta |
32620613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 105 - 197
Target Start/End: Original strand, 43146795 - 43146887
Alignment:
| Q |
105 |
gaggggaaaagtattaatgcatttcattataaaccaagtcatagatacaaggcggtacatcaacataagtttgggagctagcttccaacaggg |
197 |
Q |
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| T |
43146795 |
gaggggaaaagtattaatgcatttcattataaaccaagtcatagatacaaggcggtacatcaacataagtttggaagctagcttccaacaggg |
43146887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 41842336 - 41842431
Alignment:
| Q |
1 |
tgataggaatcgataatgattcacttggagatgatacaagaggcgtgagaagatg-gggtaaaataaggatttattttgcaagtcggatatgttga |
95 |
Q |
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| T |
41842336 |
tgataggaatcgataatgattcacttggagatgatacaagaggcgtgagaagatgagggtaaaataaggatttattttgcaagtcggataggttga |
41842431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 180
Target Start/End: Original strand, 25600218 - 25600291
Alignment:
| Q |
106 |
aggggaaaagtattaatgcatttcattataaaccaagtcatagatacaaggcggtacatcaacataagtttggga |
180 |
Q |
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| T |
25600218 |
agggaaaaagtattattgcatttcataa-aaaccaagtcatacatacaaggtagtacatcatcatatgtttggga |
25600291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 4890397 - 4890457
Alignment:
| Q |
19 |
attcacttggagatgatacaagaggcgtgagaagat-ggggtaaaataaggatttattttg |
78 |
Q |
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| T |
4890397 |
attcacttggaaatgataagagagacatgagaagattggggtaaaataaggattcattttg |
4890457 |
T |
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