View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_low_49 (Length: 272)
Name: NF3055_low_49
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 5729212 - 5729294
Alignment:
| Q |
182 |
gaagaatgtactaagtagggttttcttgaactttatatcaataacttcttccttaacgattttattgaagattaagttcatct |
264 |
Q |
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| T |
5729212 |
gaagaatatactaagtagggttttcttgaactttatatcaataacttcttccttaacgattttattgaagattaagttcatct |
5729294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 5728369 - 5728439
Alignment:
| Q |
18 |
aattatgtttcacacctcactgagatgagacaatatgaaaatattatcatgaatcaacaataagcagtatc |
88 |
Q |
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| T |
5728369 |
aattatgtttcacgcctcactgagatgagacaataagaaaatattatcatgaatcaacaataagcagtatc |
5728439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 5762235 - 5762305
Alignment:
| Q |
18 |
aattatgtttcacacctcactgagatgagacaatatgaaaatattatcatgaatcaacaataagcagtatc |
88 |
Q |
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| T |
5762235 |
aattatgtttcacgcctcactgagatgagacaatatgaaaataatatcatgaatcaacaataagcagtatc |
5762305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 5764300 - 5764370
Alignment:
| Q |
18 |
aattatgtttcacacctcactgagatgagacaatatgaaaatattatcatgaatcaacaataagcagtatc |
88 |
Q |
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| T |
5764300 |
aattatgtgtcacgcctcactgagatgagacaatatgaaaatattataatgaatcaacaataagcagtatc |
5764370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 5766544 - 5766614
Alignment:
| Q |
18 |
aattatgtttcacacctcactgagatgagacaatatgaaaatattatcatgaatcaacaataagcagtatc |
88 |
Q |
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| T |
5766544 |
aattatgtttcagtcctcactgagatgagacaatatgaaaatattataatgaatcaacaataagcagtatc |
5766614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 5768788 - 5768858
Alignment:
| Q |
18 |
aattatgtttcacacctcactgagatgagacaatatgaaaatattatcatgaatcaacaataagcagtatc |
88 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5768788 |
aattatgtttcagtcctcactgagatgagacaatatgaaaatattataatgaatcaacaataagcagtatc |
5768858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 18652982 - 18653064
Alignment:
| Q |
182 |
gaagaatgtactaagtagggttttcttgaactttatatcaataacttcttccttaacgattttattgaagattaagttcatct |
264 |
Q |
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|
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| T |
18652982 |
gaagaatatactaagtagggttttcttgaactttatatcaataacttcttccttaacgattttattgaagattaagttcatct |
18653064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 18652139 - 18652209
Alignment:
| Q |
18 |
aattatgtttcacacctcactgagatgagacaatatgaaaatattatcatgaatcaacaataagcagtatc |
88 |
Q |
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| T |
18652139 |
aattatgtttcacgcctcactgagatgagacaataagaaaatattatcatgaatcaacaataagcagtatc |
18652209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 23951180 - 23951250
Alignment:
| Q |
18 |
aattatgtttcacacctcactgagatgagacaatatgaaaatattatcatgaatcaacaataagcagtatc |
88 |
Q |
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|||||||||||| ||||| ||||||||||||||||||| ||| |||| ||||||||||||||||||||| |
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| T |
23951180 |
aattatgtttcaagcctcaatgagatgagacaatatgaacataacatcacgaatcaacaataagcagtatc |
23951250 |
T |
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