View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3055_low_53 (Length: 261)
Name: NF3055_low_53
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_low_53 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 6705913 - 6705678
Alignment:
| Q |
18 |
caaattttaattcttctttgtttttcgaacaaacgacatcttcctcatcttcttcgtccttgtccatatctatgtcaatgccaagtggtccaacctatgg |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6705913 |
caaattttaattcttctttgttttttgaacaaacgacatcttcctcatcttcttcgtccttgtccatatctatgtcaatgccaagtggtccaacctatgg |
6705814 |
T |
|
| Q |
118 |
tcatcaacaacaacatcaacatctagtaccacataactgggcatttggtccattattaccacactcaatggcaattaatatgccttcttctacagcttat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6705813 |
tcatcaacaacaacatcaacatctagtaccacataactgggcatttggtccattattaccacactcaatggcaattaatatgccttcttctacatcttat |
6705714 |
T |
|
| Q |
218 |
gttccatcttcttctttatcacaatcttgttcttct |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
6705713 |
attccatcttcttctttatcacaatcttgttcttct |
6705678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University