View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3055_low_55 (Length: 250)
Name: NF3055_low_55
Description: NF3055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3055_low_55 |
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Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 7724524 - 7724754
Alignment:
| Q |
1 |
aaaggagagtgaaacaattcatacatattaaacttcgaaaaatgagttactatgactgattatatacaaagaattcatggcgtctggtctaacgatttca |
100 |
Q |
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| T |
7724524 |
aaaggagagtgaaacaattcata----tcaaacttcgaaaaatgagttactatgaccgattatatacaaagaattcatggcatctggcctaacgatttca |
7724619 |
T |
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| Q |
101 |
atattttttctt-gttgagcaatgaccnnnnnnnnctcttccgattatcatgatattgatacaaagtttccactaccgcttaacaataactaatctttgt |
199 |
Q |
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| T |
7724620 |
atattttttttttgttgagcaataaccttt------tttttcggttatcatgatattgatacaaagtttccactaccgcttaacaataactaatctttgt |
7724713 |
T |
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| Q |
200 |
taaagaacttgtgggacacacaagacgaattctctcctttg |
240 |
Q |
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| T |
7724714 |
taaagaacttgtgggacacacaagacgaattctctcctttg |
7724754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 32729303 - 32729356
Alignment:
| Q |
142 |
gattatcatgatattgatacaaagtttccactaccgcttaacaataactaatct |
195 |
Q |
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| T |
32729303 |
gattaccatgatattggtatgaagtttccacaaccgcttaacaatgactaatct |
32729356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 237
Target Start/End: Original strand, 2112599 - 2112687
Alignment:
| Q |
149 |
atgatattgatacaaagtttccactaccgcttaacaataactaatctttgttaaagaacttgtgggacacacaagacgaattctctcct |
237 |
Q |
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| T |
2112599 |
atgatatgggtacaaagtttccaccatcacataacaatgactaatctttgtcggagaacttatgagacatacaagatggattctctcct |
2112687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 34361373 - 34361438
Alignment:
| Q |
148 |
catgatattgatacaaagtttccactaccgcttaacaataactaatctttgttaaagaacttgtgg |
213 |
Q |
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| T |
34361373 |
catgatattgatacgaagtttccactgccacttaataatgactaatctctgtcgaagaacttgtgg |
34361438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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